Visualizing functional network connectivity difference between middle adult and older subjects using an explainable machine-learning method

Mohammad S.E. Sendi, Ji Ye Chun, Vince D. Calhoun

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

In this study, we classified older (63 years old) from middle adult (45-63 years old) subjects by estimating whole-brain functional network connectivity (FNC) including the connectivity among subcortical network (SCN), auditory network (ADN), sensorimotor network (SMN), visual sensory network (VSN), cognitive control network (CCN), default mode network (DMN), cerebellar network (CBN) from the adult subjects (n = 9394; 45-81 y). We used three tree-based classifiers, including random forest (RF), XGBoost, and CATBoost. Next, we leveraged the SHapley Additive exPlanations (SHAP) approach as an explainable feature learning method to model the difference between the brain connectivity of the old and middle adult subjects. Opposed to the conventional statistical learning, which typically assesses each feature separately, the explainable machine learning method used here offers a generalized model in the connectivity difference between older and middle adults. Based on this method, we found that all three models successfully differentiate middle adult adults from older adults based on wholebrain FNC. We also found that all brain networks contributed to the top 20 features selected by the SHAP method in all three models. We highlighted the role of the CCN and SNC in differentiating between these two groups.

Original languageEnglish (US)
Title of host publicationProceedings - IEEE 20th International Conference on Bioinformatics and Bioengineering, BIBE 2020
PublisherInstitute of Electrical and Electronics Engineers Inc.
Pages955-960
Number of pages6
ISBN (Electronic)9781728195742
DOIs
StatePublished - Oct 2020
Event20th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2020 - Virtual, Cincinnati, United States
Duration: Oct 26 2020Oct 28 2020

Publication series

NameProceedings - IEEE 20th International Conference on Bioinformatics and Bioengineering, BIBE 2020

Conference

Conference20th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2020
Country/TerritoryUnited States
CityVirtual, Cincinnati
Period10/26/2010/28/20

Keywords

  • explainable machine learning
  • functional network connectivity
  • machine learning classification
  • resting-state fMRI

ASJC Scopus subject areas

  • Biotechnology
  • Genetics
  • Molecular Biology
  • Artificial Intelligence
  • Computer Science Applications
  • Biomedical Engineering
  • Modeling and Simulation
  • Health Informatics

Fingerprint

Dive into the research topics of 'Visualizing functional network connectivity difference between middle adult and older subjects using an explainable machine-learning method'. Together they form a unique fingerprint.

Cite this