Using glycinylation, a chemical derivatization technique, for the quantitation of ubiquitinated proteins

Katherine L. Fiedler, Robert J. Cotter

Research output: Contribution to journalArticle

Abstract

The quantitation of lysine post-translational modifications (PTMs) by bottom-up mass spectrometry is convoluted by the need for analogous derivatives and the production of different tryptic peptides from the unmodified and modified versions of a protein. Chemical derivatization of lysines prior to enzymatic digestion circumvents these problems and has proven to be a successful method for lysine PTM quantitation. The most notable example is the use of deuteroacetylation to quantitate lysine acetylation. In this work, levels of lysine ubiquitination were quantitated using a structurally homologous label that is chemically similar to the diglycine (GlyGly) tag, which is left at the ubiquitination site upon trypsinolysis. The LC-MS analysis of a chemically equivalent monoglycine (Gly) tag that is analogous to the corresponding GlyGly tag proved that the monoglycine tag can be used for the quantitation of ubiquitination. A glycinylation protocol was then established for the derivatization of proteins to label unmodified lysine residues with a single glycine tag. Ubiquitin multimers were used to show that after glycinylation and tryptic digestion, the mass spectrometric response from the corresponding analogous tagged peptides could be compared for relative quantitation. For a proof of principle regarding the applicability of this technique to the analysis of ubiquitination in biological samples, the glycinylation technique was used to quantitate the increase in monoubiquitinated histone H2B that is observed in yeast which lacks the enzyme responsible for deubiquitinating H2B-K123, compared to wild-type yeast.

Original languageEnglish (US)
Pages (from-to)5827-5834
Number of pages8
JournalAnalytical Chemistry
Volume85
Issue number12
DOIs
StatePublished - Jun 18 2013

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Ubiquitinated Proteins
Lysine
Yeast
Labels
Glycylglycine
Acetylation
Peptides
Ubiquitin
Histones
Glycine
Mass spectrometry
Proteins
Derivatives
Enzymes

ASJC Scopus subject areas

  • Analytical Chemistry

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Using glycinylation, a chemical derivatization technique, for the quantitation of ubiquitinated proteins. / Fiedler, Katherine L.; Cotter, Robert J.

In: Analytical Chemistry, Vol. 85, No. 12, 18.06.2013, p. 5827-5834.

Research output: Contribution to journalArticle

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