Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

Adam J. Bogdanove, Ralf Koebnik, Hong Lu, Ayako Furutani, Samuel V. Angiuoli, Prabhu B. Patil, Marie Anne Van Sluys, Robert P. Ryan, Damien F. Meyer, Sang Wook Han, Gudlur Aparna, Misha Rajaram, Arthur L. Delcher, Adam M. Phillippy, Daniela Puiu, Michael C. Schatz, Martin Shumway, Daniel D. Sommer, Cole Trapnell, Faiza BenahmedGeorge Dimitrov, Ramana Madupu, Diana Radune, Steven Sullivan, Gopaljee Jha, Hiromichi Ishihara, Sang Won Lee, Alok Pandey, Vikas Sharma, Malinee Sriariyanun, Boris Szurek, Casiana M. Vera-Cruz, Karin S. Dorman, Pamela C. Ronald, Valérie Verdier, J. Maxwell Dow, Ramesh V. Sonti, Seiji Tsuge, Volker P. Brendel, Pablo D. Rabinowicz, Jan E. Leach, Frank F. White, Steven L Salzberg

Research output: Contribution to journalArticle

Abstract

Xanthomonas is a large genus of bacteria that collectively cause disease on more than 300 plant species. The broad host range of the genus contrasts with stringent host and tissue specificity for individual species and pathovars. Whole-genome sequences of Xanthomonas campestris pv. raphani strain 756C and X. oryzae pv. oryzicola strain BLS256, pathogens that infect the mesophyll tissue of the leading models for plant biology, Arabidopsis thaliana and rice, respectively, were determined and provided insight into the genetic determinants of host and tissue specificity. Comparisons were made with genomes of closely related strains that infect the vascular tissue of the same hosts and across a larger collection of complete Xanthomonas genomes. The results suggest a model in which complex sets of adaptations at the level of gene content account for host specificity and subtler adaptations at the level of amino acid or noncoding regulatory nucleotide sequence determine tissue specificity.

Original languageEnglish (US)
Pages (from-to)5450-5464
Number of pages15
JournalJournal of Bacteriology
Volume193
Issue number19
DOIs
StatePublished - Oct 2011

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Xanthomonas
Organ Specificity
Host Specificity
Genome
Xanthomonas campestris
Arabidopsis
Blood Vessels
Bacteria
Amino Acids
Genes
Oryza

ASJC Scopus subject areas

  • Microbiology
  • Molecular Biology

Cite this

Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp. / Bogdanove, Adam J.; Koebnik, Ralf; Lu, Hong; Furutani, Ayako; Angiuoli, Samuel V.; Patil, Prabhu B.; Van Sluys, Marie Anne; Ryan, Robert P.; Meyer, Damien F.; Han, Sang Wook; Aparna, Gudlur; Rajaram, Misha; Delcher, Arthur L.; Phillippy, Adam M.; Puiu, Daniela; Schatz, Michael C.; Shumway, Martin; Sommer, Daniel D.; Trapnell, Cole; Benahmed, Faiza; Dimitrov, George; Madupu, Ramana; Radune, Diana; Sullivan, Steven; Jha, Gopaljee; Ishihara, Hiromichi; Lee, Sang Won; Pandey, Alok; Sharma, Vikas; Sriariyanun, Malinee; Szurek, Boris; Vera-Cruz, Casiana M.; Dorman, Karin S.; Ronald, Pamela C.; Verdier, Valérie; Dow, J. Maxwell; Sonti, Ramesh V.; Tsuge, Seiji; Brendel, Volker P.; Rabinowicz, Pablo D.; Leach, Jan E.; White, Frank F.; Salzberg, Steven L.

In: Journal of Bacteriology, Vol. 193, No. 19, 10.2011, p. 5450-5464.

Research output: Contribution to journalArticle

Bogdanove, AJ, Koebnik, R, Lu, H, Furutani, A, Angiuoli, SV, Patil, PB, Van Sluys, MA, Ryan, RP, Meyer, DF, Han, SW, Aparna, G, Rajaram, M, Delcher, AL, Phillippy, AM, Puiu, D, Schatz, MC, Shumway, M, Sommer, DD, Trapnell, C, Benahmed, F, Dimitrov, G, Madupu, R, Radune, D, Sullivan, S, Jha, G, Ishihara, H, Lee, SW, Pandey, A, Sharma, V, Sriariyanun, M, Szurek, B, Vera-Cruz, CM, Dorman, KS, Ronald, PC, Verdier, V, Dow, JM, Sonti, RV, Tsuge, S, Brendel, VP, Rabinowicz, PD, Leach, JE, White, FF & Salzberg, SL 2011, 'Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.', Journal of Bacteriology, vol. 193, no. 19, pp. 5450-5464. https://doi.org/10.1128/JB.05262-11
Bogdanove, Adam J. ; Koebnik, Ralf ; Lu, Hong ; Furutani, Ayako ; Angiuoli, Samuel V. ; Patil, Prabhu B. ; Van Sluys, Marie Anne ; Ryan, Robert P. ; Meyer, Damien F. ; Han, Sang Wook ; Aparna, Gudlur ; Rajaram, Misha ; Delcher, Arthur L. ; Phillippy, Adam M. ; Puiu, Daniela ; Schatz, Michael C. ; Shumway, Martin ; Sommer, Daniel D. ; Trapnell, Cole ; Benahmed, Faiza ; Dimitrov, George ; Madupu, Ramana ; Radune, Diana ; Sullivan, Steven ; Jha, Gopaljee ; Ishihara, Hiromichi ; Lee, Sang Won ; Pandey, Alok ; Sharma, Vikas ; Sriariyanun, Malinee ; Szurek, Boris ; Vera-Cruz, Casiana M. ; Dorman, Karin S. ; Ronald, Pamela C. ; Verdier, Valérie ; Dow, J. Maxwell ; Sonti, Ramesh V. ; Tsuge, Seiji ; Brendel, Volker P. ; Rabinowicz, Pablo D. ; Leach, Jan E. ; White, Frank F. ; Salzberg, Steven L. / Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp. In: Journal of Bacteriology. 2011 ; Vol. 193, No. 19. pp. 5450-5464.
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AU - Lu, Hong

AU - Furutani, Ayako

AU - Angiuoli, Samuel V.

AU - Patil, Prabhu B.

AU - Van Sluys, Marie Anne

AU - Ryan, Robert P.

AU - Meyer, Damien F.

AU - Han, Sang Wook

AU - Aparna, Gudlur

AU - Rajaram, Misha

AU - Delcher, Arthur L.

AU - Phillippy, Adam M.

AU - Puiu, Daniela

AU - Schatz, Michael C.

AU - Shumway, Martin

AU - Sommer, Daniel D.

AU - Trapnell, Cole

AU - Benahmed, Faiza

AU - Dimitrov, George

AU - Madupu, Ramana

AU - Radune, Diana

AU - Sullivan, Steven

AU - Jha, Gopaljee

AU - Ishihara, Hiromichi

AU - Lee, Sang Won

AU - Pandey, Alok

AU - Sharma, Vikas

AU - Sriariyanun, Malinee

AU - Szurek, Boris

AU - Vera-Cruz, Casiana M.

AU - Dorman, Karin S.

AU - Ronald, Pamela C.

AU - Verdier, Valérie

AU - Dow, J. Maxwell

AU - Sonti, Ramesh V.

AU - Tsuge, Seiji

AU - Brendel, Volker P.

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