Transduction of 3'-flanking sequences is common in L1 retrotransposition

Research output: Contribution to journalArticle

Abstract

Active LINE-1 (L1) elements possess the ability to transduce non-L1 DNA flanking their 3' ends to new genomic locations. Occasionally, the 3' end processing machinery may bypass the L1 polyadenylation signal and instead utilize a second downstream polyadenylation site. To determine the frequency of L1-mediated transduction in the human genome, we selected 66 previously uncharacterized L1 sequences from the GenBank database. Fifteen (23%) of these L1s had transposed flanking DNA with an average transduction length of 207 nucleotides. Since them are ~400,000 L1 elements, we estimate that insertion of transduced sequences alone may have enlarged the diploid human genome as much as 19 Mb or 0.6%. We also examined 24 full-length mouse L1s and found two long transduced sequences. Thus, L1 retrotransposition in vivo commonly transduces sequence flanking the 3' end of the element.

Original languageEnglish (US)
Pages (from-to)653-657
Number of pages5
JournalHuman Molecular Genetics
Volume9
Issue number4
StatePublished - Mar 1 2000
Externally publishedYes

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Long Interspersed Nucleotide Elements
3' Flanking Region
Polyadenylation
Human Genome
Insertional Mutagenesis
DNA
Nucleic Acid Databases
Diploidy
Nucleotides
Databases

ASJC Scopus subject areas

  • Genetics

Cite this

Transduction of 3'-flanking sequences is common in L1 retrotransposition. / Goodier, John L.; Ostertag, Eric M.; Kazazian, Haig H.

In: Human Molecular Genetics, Vol. 9, No. 4, 01.03.2000, p. 653-657.

Research output: Contribution to journalArticle

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