Transcriptional Landscape of Cardiomyocyte Maturation

Hideki Uosaki, Patrick Cahan, Dong Lee, Songnan Wang, Matthew Miyamoto, Laviel Fernandez, David A Kass, Chulan Kwon

Research output: Contribution to journalArticle

Abstract

Decades of progress in developmental cardiology has advanced our understanding of the early aspects of heart development, including cardiomyocyte (CM) differentiation. However, control of the CM maturation that is subsequently required to generate adult myocytes remains elusive. Here, we analyzed over 200 microarray datasets from early embryonic to adult hearts and identified a large number of genes whose expression shifts gradually and continuously during maturation. We generated an atlas of integrated gene expression, biological pathways, transcriptional regulators, and gene regulatory networks (GRNs), which show discrete sets of key transcriptional regulators and pathways activated or suppressed during CM maturation. We developed a GRN-based program named MatStatCM that indexes CM maturation status. MatStatCM reveals that pluripotent-stem-cell-derived CMs mature early in culture but are arrested at the late embryonic stage with aberrant regulation of key transcription factors. Our study provides a foundation for understanding CM maturation. Based on maturation stage-specific gene regulatory networks, Uosaki et al. develop a method to assess the maturation status of cardiomyocytes and find that the maturation of PSC-CMs is arrested at a late embryonic stage with inactive PPARs and active CTNNB1.

Original languageEnglish (US)
Pages (from-to)1705-1716
Number of pages12
JournalCell Reports
Volume13
Issue number8
DOIs
StatePublished - Nov 24 2015

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Cardiac Myocytes
Genes
Gene expression
Gene Regulatory Networks
Cardiology
Peroxisome Proliferator-Activated Receptors
Microarrays
Stem cells
Cell culture
Transcription Factors
Gene Expression
Pluripotent Stem Cells
Atlases
Regulator Genes
Muscle Cells

ASJC Scopus subject areas

  • Biochemistry, Genetics and Molecular Biology(all)

Cite this

Transcriptional Landscape of Cardiomyocyte Maturation. / Uosaki, Hideki; Cahan, Patrick; Lee, Dong; Wang, Songnan; Miyamoto, Matthew; Fernandez, Laviel; Kass, David A; Kwon, Chulan.

In: Cell Reports, Vol. 13, No. 8, 24.11.2015, p. 1705-1716.

Research output: Contribution to journalArticle

Uosaki, Hideki ; Cahan, Patrick ; Lee, Dong ; Wang, Songnan ; Miyamoto, Matthew ; Fernandez, Laviel ; Kass, David A ; Kwon, Chulan. / Transcriptional Landscape of Cardiomyocyte Maturation. In: Cell Reports. 2015 ; Vol. 13, No. 8. pp. 1705-1716.
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