The saccharomyces cerevisiae Nrd1-Nab3 transcription termination pathway acts in opposition to ras signaling and mediates response to nutrient depletion

Miranda M. Darby, Leo Serebreni, Xuewen Pan, Jef D. Boeke, Jeffry Lynn Corden

Research output: Contribution to journalArticle

Abstract

The Saccharomyces cerevisiae Nrd1-Nab3 pathway directs the termination and processing of short RNA polymerase II transcripts. Despite the potential for Nrd1-Nab3 to affect the transcription of both coding and noncoding RNAs, little is known about how the Nrd1-Nab3 pathway interacts with other pathways in the cell. Here we present the results of a high-throughput synthetic lethality screen for genes that interact with NRD1 and show roles for Nrd1 in the regulation of mitochondrial abundance and cell size. We also provide genetic evidence of interactions between the Nrd1-Nab3 and Ras/protein kinase A (PKA) pathways. Whereas the Ras pathway promotes the transcription of genes involved in growth and glycolysis, the Nrd1-Nab3 pathway appears to have a novel role in the rapid suppression of some genes when cells are shifted to poor growth conditions. We report the identification of new mRNA targets of the Nrd1-Nab3 pathway that are rapidly repressed in response to glucose depletion. Glucose depletion also leads to the dephosphorylation of Nrd1 and the formation of novel nuclear speckles that contain Nrd1 and Nab3. Taken together, these results indicate a role for Nrd1-Nab3 in regulating the cellular response to nutrient availability.

Original languageEnglish (US)
Pages (from-to)1762-1775
Number of pages14
JournalMolecular and Cellular Biology
Volume32
Issue number10
DOIs
StatePublished - May 2012

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Saccharomyces cerevisiae
Food
Mitochondrial Size
Genes
Glucose
ras Proteins
Untranslated RNA
RNA Polymerase II
Glycolysis
Growth
Cyclic AMP-Dependent Protein Kinases
Cell Size
Messenger RNA
Synthetic Lethal Mutations

ASJC Scopus subject areas

  • Molecular Biology
  • Cell Biology

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The saccharomyces cerevisiae Nrd1-Nab3 transcription termination pathway acts in opposition to ras signaling and mediates response to nutrient depletion. / Darby, Miranda M.; Serebreni, Leo; Pan, Xuewen; Boeke, Jef D.; Corden, Jeffry Lynn.

In: Molecular and Cellular Biology, Vol. 32, No. 10, 05.2012, p. 1762-1775.

Research output: Contribution to journalArticle

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