Template registration with missing parts

Application to the segmentation of M. tuberculosis infected lungs

Camille Vidal, Joshua Hewitt, Stephanie Davis, Laurent Younes, Sanjay Jain, Bruno Jedynak

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

Many techniques have been proposed to segment organs from images, however the segmentation of diseased organs remains challenging and frequently requires lots of user interaction. The challenge consists of segmenting an organ while its appearance and its shape vary due to the presence of the disease in addition to individual variations. We propose a template registration technique that can be used to recover the complete segmentation of a diseased organ from a partial segmentation. The usual template registration method is modified in such a way that it is robust to missing parts. The proposed method is used to segment Mycobacterium tuberculosis infected lungs in CT images of experimentally infected mice. Using synthetic data, we evaluate and compare the performance of the proposed algorithm with the usual sum of squared difference cost function.

Original languageEnglish (US)
Title of host publicationProceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009
Pages718-721
Number of pages4
DOIs
StatePublished - 2009
Event2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009 - Boston, MA, United States
Duration: Jun 28 2009Jul 1 2009

Other

Other2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009
CountryUnited States
CityBoston, MA
Period6/28/097/1/09

Fingerprint

Cost functions
Tuberculosis
Lung
Mycobacterium tuberculosis
Costs and Cost Analysis

Keywords

  • Diseased organs
  • Registration
  • Template-based segmentation

ASJC Scopus subject areas

  • Biomedical Engineering
  • Radiology Nuclear Medicine and imaging

Cite this

Vidal, C., Hewitt, J., Davis, S., Younes, L., Jain, S., & Jedynak, B. (2009). Template registration with missing parts: Application to the segmentation of M. tuberculosis infected lungs. In Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009 (pp. 718-721). [5193148] https://doi.org/10.1109/ISBI.2009.5193148

Template registration with missing parts : Application to the segmentation of M. tuberculosis infected lungs. / Vidal, Camille; Hewitt, Joshua; Davis, Stephanie; Younes, Laurent; Jain, Sanjay; Jedynak, Bruno.

Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009. 2009. p. 718-721 5193148.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Vidal, C, Hewitt, J, Davis, S, Younes, L, Jain, S & Jedynak, B 2009, Template registration with missing parts: Application to the segmentation of M. tuberculosis infected lungs. in Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009., 5193148, pp. 718-721, 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009, Boston, MA, United States, 6/28/09. https://doi.org/10.1109/ISBI.2009.5193148
Vidal C, Hewitt J, Davis S, Younes L, Jain S, Jedynak B. Template registration with missing parts: Application to the segmentation of M. tuberculosis infected lungs. In Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009. 2009. p. 718-721. 5193148 https://doi.org/10.1109/ISBI.2009.5193148
Vidal, Camille ; Hewitt, Joshua ; Davis, Stephanie ; Younes, Laurent ; Jain, Sanjay ; Jedynak, Bruno. / Template registration with missing parts : Application to the segmentation of M. tuberculosis infected lungs. Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009. 2009. pp. 718-721
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