Task-evoked brain functional magnetic susceptibility mapping by independent component analysis (χICA)

Zikuan Chen, Vince D. Calhoun

Research output: Contribution to journalArticle


Background: Conventionally, independent component analysis (ICA) is performed on an fMRI magnitude dataset to analyze brain functional mapping (AICA). By solving the inverse problem of fMRI, we can reconstruct the brain magnetic susceptibility (χ) functional states. Upon the reconstructed χ dataspace, we propose an ICA-based brain functional χ mapping method (χICA) to extract task-evoked brain functional map. New methods: A complex division algorithm is applied to a timeseries of fMRI phase images to extract temporal phase changes (relative to an OFF-state snapshot). A computed inverse MRI (CIMRI) model is used to reconstruct a 4D brain χ response dataset. χICA is implemented by applying a spatial InfoMax ICA algorithm to the reconstructed 4D χ dataspace. Results: With finger-tapping experiments on a 7T system, the χICA-extracted χ-depicted functional map is similar to the SPM-inferred functional χ map by a spatial correlation of 0.67 ± 0.05. In comparison, the AICA-extracted magnitude-depicted map is correlated with the SPM magnitude map by 0.81 ± 0.05. The understanding of the inferiority of χICA to AICA for task-evoked functional map is an ongoing research topic. Comparison with existing methods: For task-evoked brain functional mapping, we compare the data-driven ICA method with the task-correlated SPM method. In particular, we compare χICA with AICA for extracting task-correlated timecourses and functional maps. Conclusion: χICA can extract a χ-depicted task-evoked brain functional map from a reconstructed χ dataspace without the knowledge about brain hemodynamic responses. The χICA-extracted brain functional χ map reveals a bidirectional BOLD response pattern that is unavailable (or different) from AICA.

Original languageEnglish (US)
Pages (from-to)161-171
Number of pages11
JournalJournal of Neuroscience Methods
StatePublished - Mar 1 2016
Externally publishedYes


  • Bidirectional BOLD responses
  • Computed inverse MRI (CIMRI)
  • Function-structure colocalization
  • Independent component analysis (ICA)
  • Model timecourse
  • Spatiotemporal separation
  • Task-evoked brain functional mapping

ASJC Scopus subject areas

  • Neuroscience(all)

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