Susceptibility to childhood pneumonia: A genome-wide analysis

Lystra P. Hayden, Michael H. Cho, Merry Lynn N. McDonald, James D. Crapo, Terri H. Beaty, Edwin K. Silverman, Craig P. Hersh

Research output: Contribution to journalArticlepeer-review

Abstract

Previous studies have indicated that in adult smokers, a history of childhood pneumonia is associated with reduced lung function and chronic obstructive pulmonary disease. There have been few previous investigations using genome-wide association studies to investigate genetic predisposition to pneumonia. This study aims to identify the genetic variants associated with the development of pneumonia during childhood and over the course of the lifetime. Study subjects included current and former smokers with and without chronic obstructive pulmonary disease participating in the COPDGene Study. Pneumonia was defined by subject self-report, with childhood pneumonia categorized as having the first episode at ,16 years. Genome-wide association studies for childhood pneumonia (843 cases, 9,091 control subjects) and lifetime pneumonia (3,766 cases, 5,659 control subjects) were performed separately in non-Hispanic whites and African Americans. Non-Hispanic white and African American populations were combined in the meta-analysis. Top genetic variants from childhood pneumonia were assessed in network analysis. No single-nucleotide polymorphisms reached genome-wide significance, although we identified potential regions of interest. In the childhood pneumonia analysis, this included variants in NGR1 (P = 6.331028), PAK6 (P = 3.331027), and near MATN1 (P = 2.831027). In the lifetime pneumonia analysis, this included variants in LOC339862 (P = 8.731027), RAPGEF2 (P = 8.431027), PHACTR1 (P = 6.131027), near PRR27 (P = 4.331027), and near MCPH1 (P = 2.731027). Network analysis of the genes associated with childhood pneumonia included top networks related to development, blood vessel morphogenesis, muscle contraction,WNT signaling, DNA damage, apoptosis, inflammation, and immune response (P<0.05). We have identified genes potentially associated with the risk of pneumonia. Further research will be required to confirm these associations and to determine biological mechanisms.

Original languageEnglish (US)
Pages (from-to)20-28
Number of pages9
JournalAmerican journal of respiratory cell and molecular biology
Volume56
Issue number1
DOIs
StatePublished - Jan 2017

Keywords

  • Chronic obstructive pulmonary disease
  • Genetic epidemiology
  • Genome-wide association study
  • Pediatrics
  • Pneumonia

ASJC Scopus subject areas

  • Molecular Biology
  • Pulmonary and Respiratory Medicine
  • Clinical Biochemistry
  • Cell Biology

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