Structures of some substituted nitrophenols determined by ab initio computation: On the origin of heterocliticity in anti-nitrophenol antibodies

Christian S. Parry, Bernard R. Brooks, Nikita Matsunaga, Mario L Amzel

Research output: Contribution to journalArticle

Abstract

Nitrophenol and its derivatives are widely used in analytical chemistry and also as haptens in immunology. In C57BL/6 mice the iodo derivative binds the antibody to nitrophenol over ten times more efficiently than the eliciting hapten nitrophenol. The latter result is unusual since it is expected that the eliciting hapten should bind its antibody best and all other haptens bind less well. Our X-ray crystallographic and molecular modelling studies showed that in the structures of the antibody in complex with nitrophenol and iodonitrophenol the haptens bind in a cavity making van der Waals and hydrogen bonding contacts with the antibody. The iodine in the iodonitrophenol-antibody complex points away from the binding site and does not provide additional contacts with the protein. In order to understand how the iodine substitution in the nitrophenyl ring contributes to the binding of the hapten to the antibody we have carried out ab initio molecular orbital studies on nitrophenol, iodonitrophenol and their corresponding anions. We have approached this problem by analyzing the electron distribution, bond and molecular energies. The wavefunction was determined at the Hartree-Fock level using the basis set 3-21G(d,p). Optimized equilibrium geometries were characterized by harmonic vibrational analysis. Atomic charges were obtained from Mulliken's population analysis and by the direct integration of molecular electron densities using Bader's "Atoms In Molecules". We find that the substitution with iodine changes the charge distribution in the nitrophenyl ring, thus enhancing the electrostatic interaction of the ring with the antibody heavy chain Lysine 59 and Arginine 50. This explains how the iodine increases the binding affinity without directly interacting with the protein.

Original languageEnglish (US)
Pages (from-to)555-563
Number of pages9
JournalJournal of Molecular Structure: THEOCHEM
Volume398-399
StatePublished - Jun 30 1997

Fingerprint

Nitrophenols
antibodies
Haptens
Antibodies
Anti-Idiotypic Antibodies
Iodine
iodine
rings
Substitution reactions
immunology
Immunology
Electrons
substitutes
analytical chemistry
Derivatives
proteins
Proteins
Arginine
Molecular modeling
lysine

Keywords

  • Anti-nitrophenol antibodies
  • Heterocliticity
  • Nitrophenol

ASJC Scopus subject areas

  • Physical and Theoretical Chemistry
  • Computational Theory and Mathematics
  • Atomic and Molecular Physics, and Optics

Cite this

Structures of some substituted nitrophenols determined by ab initio computation : On the origin of heterocliticity in anti-nitrophenol antibodies. / Parry, Christian S.; Brooks, Bernard R.; Matsunaga, Nikita; Amzel, Mario L.

In: Journal of Molecular Structure: THEOCHEM, Vol. 398-399, 30.06.1997, p. 555-563.

Research output: Contribution to journalArticle

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