Structural basis for the mechanism and regulation of Sir2 enzymes

José L. Avalos, Jef D. Boeke, Cynthia Wolberger

Research output: Contribution to journalArticle

Abstract

Sir2 proteins form a family of NAD+-dependent protein deacetylases required for diverse biological processes, including transcriptional silencing, suppression of rDNA recombination, control of p53 activity, regulation of acetyl-CoA synthetase, and aging. Although structures of Sir2 enzymes in the presence and absence of peptide substrate or NAD + have been determined, the role of the enzyme in the mechanism of deacetylation and NAD+ cleavage is still unclear. Here, we present additional structures of Sir2Af2 in several differently complexed states: in a productive complex with NAD+, in a nonproductive NAD+ complex with bound ADP-ribose, and in the unliganded state. We observe a new mode of NAD+ binding that seems to depend on acetyl-lysine binding, in which the nicotinamide ring of NAD+ is buried in the highly conserved "C" pocket of the enzyme. We propose a detailed structure-based mechanism for deacetylation and nicotinamide inhibition of Sir2 consistent with mutagenesis and enzymatic studies.

Original languageEnglish (US)
Pages (from-to)639-648
Number of pages10
JournalMolecular Cell
Volume13
Issue number5
DOIs
StatePublished - Mar 5 2004

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NAD
Enzymes
Niacinamide
Acetate-CoA Ligase
Adenosine Diphosphate Ribose
Biological Phenomena
Ribosomal DNA
Mutagenesis
Genetic Recombination
Lysine
Proteins
Peptides

ASJC Scopus subject areas

  • Molecular Biology

Cite this

Structural basis for the mechanism and regulation of Sir2 enzymes. / Avalos, José L.; Boeke, Jef D.; Wolberger, Cynthia.

In: Molecular Cell, Vol. 13, No. 5, 05.03.2004, p. 639-648.

Research output: Contribution to journalArticle

Avalos, José L. ; Boeke, Jef D. ; Wolberger, Cynthia. / Structural basis for the mechanism and regulation of Sir2 enzymes. In: Molecular Cell. 2004 ; Vol. 13, No. 5. pp. 639-648.
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