Splicing factor 3B1 hypomethylation is associated with altered SF3B1 transcript expression in older humans

Alice C. Holly, Luke C. Pilling, Dena Hernandez, Benjamin P. Lee, Andrew Singleton, Luigi Ferrucci, David Melzer, Lorna W. Harries

Research output: Contribution to journalArticle

Abstract

Ageing in man is associated with changes to the splicing factor pool. A proportion of splicing factors are regulated during ageing by mechanisms involving the Ataxia Telangiectasia Mutated (ATM) gene, but the factors that determine the remaining proportion have yet to be identified.DNA methylation is known to be an important regulatory mechanism of gene expression. We assessed age-associated methylation and expression levels for 27 splicing factor genes, in peripheral blood samples from the InCHIANTI study. Examination of splicing patterns at specific loci was examined in a second cohort, the Exeter 10000 study.27/502 methylation probes in 17 different genes were associated with age. Most changes were not associated with transcript expression levels or splicing patterns, but hypomethylation of the SF3B1 promoter region was found to mediate 53% of the relationship between age and transcript expression at this locus (p= 0.02).DNA methylation does not appear to play a major role in regulation of the splicing factors, but changes in SF3B1 expression may be attributable to promoter hypomethylation at this locus. SF3B1 encodes a critical component of the U2 snRNP; altered expression of this gene may therefore contribute to the loss of regulated mRNA splicing that occurs with age.

Original languageEnglish (US)
Pages (from-to)50-56
Number of pages7
JournalMechanisms of Ageing and Development
Volume135
Issue number1
DOIs
StatePublished - Jan 2014
Externally publishedYes

Fingerprint

DNA Methylation
Methylation
U2 Small Nuclear Ribonucleoproteins
Genes
Gene Expression
Ataxia Telangiectasia
Regulator Genes
Genetic Promoter Regions
Messenger RNA
RNA Splicing Factors

Keywords

  • Ageing
  • DNA methylation
  • Epigenetics
  • SF3B1
  • Splicing

ASJC Scopus subject areas

  • Aging
  • Developmental Biology

Cite this

Holly, A. C., Pilling, L. C., Hernandez, D., Lee, B. P., Singleton, A., Ferrucci, L., ... Harries, L. W. (2014). Splicing factor 3B1 hypomethylation is associated with altered SF3B1 transcript expression in older humans. Mechanisms of Ageing and Development, 135(1), 50-56. https://doi.org/10.1016/j.mad.2014.01.005

Splicing factor 3B1 hypomethylation is associated with altered SF3B1 transcript expression in older humans. / Holly, Alice C.; Pilling, Luke C.; Hernandez, Dena; Lee, Benjamin P.; Singleton, Andrew; Ferrucci, Luigi; Melzer, David; Harries, Lorna W.

In: Mechanisms of Ageing and Development, Vol. 135, No. 1, 01.2014, p. 50-56.

Research output: Contribution to journalArticle

Holly, AC, Pilling, LC, Hernandez, D, Lee, BP, Singleton, A, Ferrucci, L, Melzer, D & Harries, LW 2014, 'Splicing factor 3B1 hypomethylation is associated with altered SF3B1 transcript expression in older humans', Mechanisms of Ageing and Development, vol. 135, no. 1, pp. 50-56. https://doi.org/10.1016/j.mad.2014.01.005
Holly, Alice C. ; Pilling, Luke C. ; Hernandez, Dena ; Lee, Benjamin P. ; Singleton, Andrew ; Ferrucci, Luigi ; Melzer, David ; Harries, Lorna W. / Splicing factor 3B1 hypomethylation is associated with altered SF3B1 transcript expression in older humans. In: Mechanisms of Ageing and Development. 2014 ; Vol. 135, No. 1. pp. 50-56.
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