Spatiotemporal regulation of GLI target genes in the mammalian limb bud

Jordan P. Lewandowski, Fang Du, Shilu Zhang, Marian B. Powell, Kristin N. Falkenstein, Hong Kai Ji, Steven A. Vokes

Research output: Contribution to journalArticle

Abstract

GLI proteins convert Sonic hedgehog (Shh) signaling into a transcriptional output in a tissue-specific fashion. The Shh pathway has been extensively studied in the limb bud, where it helps regulate growth through a SHH-FGF feedback loop. However, the transcriptional response is still poorly understood. We addressed this by determining the gene expression patterns of approximately 200 candidate GLI-target genes and identified three discrete SHH-responsive expression domains. GLI-target genes expressed in the three domains are predominately regulated by derepression of GLI3 but have different temporal requirements for SHH. The GLI binding regions associated with these genes harbor both distinct and common DNA motifs. Given the potential for interaction between the SHH and FGF pathways, we also measured the response of GLI-target genes to inhibition of FGF signaling and found the majority were either unaffected or upregulated. These results provide the first characterization of the spatiotemporal response of a large group of GLI-target genes and lay the foundation for a systems-level understanding of the gene regulatory networks underlying SHH-mediated limb patterning.

Original languageEnglish (US)
Pages (from-to)92-103
Number of pages12
JournalDevelopmental Biology
Volume406
Issue number1
DOIs
StatePublished - Oct 1 2015

Fingerprint

Limb Buds
Genes
Hedgehog Proteins
Nucleotide Motifs
Gene Regulatory Networks
Extremities
Gene Expression
Growth

Keywords

  • Cis-regulatory modules
  • DNA motifs
  • FGF
  • GLI
  • In situ hybridization
  • Limb development
  • RNAseq
  • Sonic hedgehog

ASJC Scopus subject areas

  • Developmental Biology
  • Cell Biology
  • Molecular Biology

Cite this

Lewandowski, J. P., Du, F., Zhang, S., Powell, M. B., Falkenstein, K. N., Ji, H. K., & Vokes, S. A. (2015). Spatiotemporal regulation of GLI target genes in the mammalian limb bud. Developmental Biology, 406(1), 92-103. https://doi.org/10.1016/j.ydbio.2015.07.022

Spatiotemporal regulation of GLI target genes in the mammalian limb bud. / Lewandowski, Jordan P.; Du, Fang; Zhang, Shilu; Powell, Marian B.; Falkenstein, Kristin N.; Ji, Hong Kai; Vokes, Steven A.

In: Developmental Biology, Vol. 406, No. 1, 01.10.2015, p. 92-103.

Research output: Contribution to journalArticle

Lewandowski, JP, Du, F, Zhang, S, Powell, MB, Falkenstein, KN, Ji, HK & Vokes, SA 2015, 'Spatiotemporal regulation of GLI target genes in the mammalian limb bud', Developmental Biology, vol. 406, no. 1, pp. 92-103. https://doi.org/10.1016/j.ydbio.2015.07.022
Lewandowski, Jordan P. ; Du, Fang ; Zhang, Shilu ; Powell, Marian B. ; Falkenstein, Kristin N. ; Ji, Hong Kai ; Vokes, Steven A. / Spatiotemporal regulation of GLI target genes in the mammalian limb bud. In: Developmental Biology. 2015 ; Vol. 406, No. 1. pp. 92-103.
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