Single-molecule FRET analysis of replicative helicases

Seung Jae Lee, Salman Syed, Taekjip Ha

Research output: Chapter in Book/Report/Conference proceedingChapter

Abstract

Over the recent years single-molecule fluorescence resonance energy transfer (smFRET) technique has proven to be one of the most powerful tools for revealing mechanistic insights into helicase activities. Here we describe details of single-molecule FRET assays for probing DNA unwinding activities as well as functional dynamics by replicative helicases in real time. The ability of smFRET to measure the behavior of biomolecules at a nanometer scale enabled us to address how the leading and lagging strand synthesis are coordinated during DNA replication, to resolve DNA unwinding steps of Bacteriophage T7 helicase, and to observe heterogeneous unwinding patterns modulated by the DNA binding domain of E1 helicase. These single-molecule FRET assays are generally applicable to other replicative and nonreplicative hexameric helicases.

Original languageEnglish (US)
Title of host publicationMethods in Molecular Biology
PublisherHumana Press Inc.
Pages233-250
Number of pages18
DOIs
StatePublished - Jan 1 2018

Publication series

NameMethods in Molecular Biology
Volume1805
ISSN (Print)1064-3745

Fingerprint

Fluorescence Resonance Energy Transfer
DNA
Bacteriophage T7
DNA Replication

Keywords

  • DNA replication
  • E1
  • FRET
  • Replicative helicase
  • Single-molecule
  • T7 gp4

ASJC Scopus subject areas

  • Molecular Biology
  • Genetics

Cite this

Lee, S. J., Syed, S., & Ha, T. (2018). Single-molecule FRET analysis of replicative helicases. In Methods in Molecular Biology (pp. 233-250). (Methods in Molecular Biology; Vol. 1805). Humana Press Inc.. https://doi.org/10.1007/978-1-4939-8556-2_12

Single-molecule FRET analysis of replicative helicases. / Lee, Seung Jae; Syed, Salman; Ha, Taekjip.

Methods in Molecular Biology. Humana Press Inc., 2018. p. 233-250 (Methods in Molecular Biology; Vol. 1805).

Research output: Chapter in Book/Report/Conference proceedingChapter

Lee, SJ, Syed, S & Ha, T 2018, Single-molecule FRET analysis of replicative helicases. in Methods in Molecular Biology. Methods in Molecular Biology, vol. 1805, Humana Press Inc., pp. 233-250. https://doi.org/10.1007/978-1-4939-8556-2_12
Lee SJ, Syed S, Ha T. Single-molecule FRET analysis of replicative helicases. In Methods in Molecular Biology. Humana Press Inc. 2018. p. 233-250. (Methods in Molecular Biology). https://doi.org/10.1007/978-1-4939-8556-2_12
Lee, Seung Jae ; Syed, Salman ; Ha, Taekjip. / Single-molecule FRET analysis of replicative helicases. Methods in Molecular Biology. Humana Press Inc., 2018. pp. 233-250 (Methods in Molecular Biology).
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