RNABase: An annotated database of RNA structures

Venkatesh L. Murthy, George D. Rose

Research output: Contribution to journalReview article

Abstract

RNABase is a unified database of all three-dimensional structures containing RNA deposited in either the Protein Data Bank (PDB) or Nucleic Acid Data Base (NDB). For each structure, RNABase contains a brief summary as well as annotation of conformational parameters, identification of possible model errors, Ramachandran-style conformational maps and classification of ribonucleotides into conformers. These same analyses can also be performed on structures submitted by users. To facilitate access, structures are automatically placed into a variety of functional and structural categories, including: ribozymes, pseudoknots, etc. RNABase can be freely accessed on the web at http:// www.rnabase.org. We are committed to maintaining this database indefinitely.

Original languageEnglish (US)
Pages (from-to)502-504
Number of pages3
JournalNucleic acids research
Volume31
Issue number1
DOIs
StatePublished - Jan 1 2003

ASJC Scopus subject areas

  • Genetics

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