Rare coding TTN variants are associated with electrocardiographic QT interval in the general population

Ashish Kapoor, Kiranmayee Bakshy, Linda Xu, Priyanka Nandakumar, Dongwon Lee, Eric Boerwinkle, Megan L. Grove, Dan E. Arking, Aravinda Chakravarti

Research output: Contribution to journalArticlepeer-review

Abstract

We have shown previously that noncoding variants mapping around a specific set of 170 genes encoding cardiomyocyte intercalated disc (ID) proteins are more enriched for associations with QT interval than observed for genome-wide comparisons. At a false discovery rate (FDR) of 5%, we had identified 28 such ID protein-encoding genes. Here, we assessed whether coding variants at these 28 genes affect QT interval in the general population as well. We used exome sequencing in 4,469 European American (EA) and 1,880 African American (AA) ancestry individuals from the population-based ARIC (Atherosclerosis Risk In Communities) Study cohort to focus on rare (allele frequency <1%) potentially deleterious (nonsynonymous, stop-gain, splice) variants (n = 2,398 for EA; n = 1,693 for AA) and tested their effects on standardized QT interval residuals. We identified 27 nonsynonymous variants associated with QT interval (FDR 5%), 22 of which were in TTN. Taken together with the mapping of a QT interval GWAS locus near TTN, our observation of rare deleterious coding variants in TTN associated with QT interval show that TTN plays a role in regulation of cardiac electrical conductance and coupling, and is a risk factor for cardiac arrhythmias and sudden cardiac death.

Original languageEnglish (US)
Article number28356
JournalScientific reports
Volume6
DOIs
StatePublished - Jun 20 2016

ASJC Scopus subject areas

  • General

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