Quantitative determination of mar hydrolase residue specificity in vitro by tandem mass spectrometry

Robert Lyle McPherson, Shao En Ong, Anthony Kar Lun Leung

Research output: Chapter in Book/Report/Conference proceedingChapter

Abstract

ADP-ribosylation is a posttranslational modification that involves the conjugation of monomers and polymers of the small molecule ADP-ribose onto amino acid side chains. A family of ADP-ribosyltransferases catalyzes the transfer of the ADP-ribose moiety of nicotinamide adenine dinucleotide (NAD+) onto a variety of amino acid side chains including aspartate, glutamate, lysine, arginine, cysteine, and serine. The monomeric form of the modification mono(ADP-ribosyl)ation (MARylation) is reversed by a number of enzymes including a family of MacroD-type macrodomain-containing mono(ADP-ribose) (MAR) hydrolases. Though it has been inferred from various chemical tests that these enzymes have specificity for MARylated aspartate and glutamate residues in vitro, the amino acid and site specificity of different family members are often not unambiguously defined. Here we describe a mass spectrometry-based assay to determine the site specificity of MAR hydrolases in vitro.

Original languageEnglish (US)
Title of host publicationMethods in Molecular Biology
PublisherHumana Press Inc.
Pages271-283
Number of pages13
DOIs
StatePublished - Jan 1 2018

Publication series

NameMethods in Molecular Biology
Volume1813
ISSN (Print)1064-3745

Fingerprint

Adenosine Diphosphate Ribose
Mars
Hydrolases
Tandem Mass Spectrometry
arginine glutamate
Amino Acids
Aspartic Acid
NAD
Adenosine Diphosphate
ADP Ribose Transferases
Enzymes
Post Translational Protein Processing
Serine
Lysine
Cysteine
Glutamic Acid
Mass Spectrometry
Polymers
In Vitro Techniques

Keywords

  • ADP-ribosylation
  • ADP-ribosylhydrolase
  • Macrodomain
  • Mass spectrometry

ASJC Scopus subject areas

  • Molecular Biology
  • Genetics

Cite this

McPherson, R. L., Ong, S. E., & Leung, A. K. L. (2018). Quantitative determination of mar hydrolase residue specificity in vitro by tandem mass spectrometry. In Methods in Molecular Biology (pp. 271-283). (Methods in Molecular Biology; Vol. 1813). Humana Press Inc.. https://doi.org/10.1007/978-1-4939-8588-3_19

Quantitative determination of mar hydrolase residue specificity in vitro by tandem mass spectrometry. / McPherson, Robert Lyle; Ong, Shao En; Leung, Anthony Kar Lun.

Methods in Molecular Biology. Humana Press Inc., 2018. p. 271-283 (Methods in Molecular Biology; Vol. 1813).

Research output: Chapter in Book/Report/Conference proceedingChapter

McPherson, RL, Ong, SE & Leung, AKL 2018, Quantitative determination of mar hydrolase residue specificity in vitro by tandem mass spectrometry. in Methods in Molecular Biology. Methods in Molecular Biology, vol. 1813, Humana Press Inc., pp. 271-283. https://doi.org/10.1007/978-1-4939-8588-3_19
McPherson RL, Ong SE, Leung AKL. Quantitative determination of mar hydrolase residue specificity in vitro by tandem mass spectrometry. In Methods in Molecular Biology. Humana Press Inc. 2018. p. 271-283. (Methods in Molecular Biology). https://doi.org/10.1007/978-1-4939-8588-3_19
McPherson, Robert Lyle ; Ong, Shao En ; Leung, Anthony Kar Lun. / Quantitative determination of mar hydrolase residue specificity in vitro by tandem mass spectrometry. Methods in Molecular Biology. Humana Press Inc., 2018. pp. 271-283 (Methods in Molecular Biology).
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