Plasma proteome database

Malabika Sarker, G. Hanumanthu, Akhilesh Pandey

Research output: Chapter in Book/Report/Conference proceedingChapter

Abstract

The plasma proteome is one of the most important proteomes from a diagnostic standpoint, as quantitative changes between normal and diseased states can be used to discover novel biomarkers for clinical diagnosis and therapeutic monitoring of diseases. HUPO's Plasma Proteome Project has involved characterization of the plasma proteome by an international consortium using technologies ranging from antibody arrays to mass spectrometry and has helped in the construction of a substantial catalog of plasma proteins. Our group has developed the Plasma Proteome Database (http://www.plasmaproteomedatabase.org) as a comprehensive resource of annotated data for posttranslational modifications, single-nucleotide polymorphisms, tissue expression, subcellular localization, and disease involvement of plasma proteins. This database should serve to facilitate further research to help understand the plasma proteome in health and disease.

Original languageEnglish (US)
Title of host publicationProteomics of Human Body Fluids: Principles, Methods, and Applications
PublisherHumana Press Inc.
Pages129-136
Number of pages8
ISBN (Print)9781597454322, 9781588296573
DOIs
StatePublished - 2007

Fingerprint

Proteome
Databases
Plasmas
Blood Proteins
Biomarkers
Post Translational Protein Processing
Polymorphism
Single Nucleotide Polymorphism
Mass spectrometry
Mass Spectrometry
Nucleotides
Health
Tissue
Technology
Antibodies
Monitoring
Research

Keywords

  • annotation
  • bioinformatics
  • database
  • mass spectrometry
  • plasma
  • Proteomics

ASJC Scopus subject areas

  • Biochemistry, Genetics and Molecular Biology(all)

Cite this

Sarker, M., Hanumanthu, G., & Pandey, A. (2007). Plasma proteome database. In Proteomics of Human Body Fluids: Principles, Methods, and Applications (pp. 129-136). Humana Press Inc.. https://doi.org/10.1007/978-1-59745-432-2_6

Plasma proteome database. / Sarker, Malabika; Hanumanthu, G.; Pandey, Akhilesh.

Proteomics of Human Body Fluids: Principles, Methods, and Applications. Humana Press Inc., 2007. p. 129-136.

Research output: Chapter in Book/Report/Conference proceedingChapter

Sarker, M, Hanumanthu, G & Pandey, A 2007, Plasma proteome database. in Proteomics of Human Body Fluids: Principles, Methods, and Applications. Humana Press Inc., pp. 129-136. https://doi.org/10.1007/978-1-59745-432-2_6
Sarker M, Hanumanthu G, Pandey A. Plasma proteome database. In Proteomics of Human Body Fluids: Principles, Methods, and Applications. Humana Press Inc. 2007. p. 129-136 https://doi.org/10.1007/978-1-59745-432-2_6
Sarker, Malabika ; Hanumanthu, G. ; Pandey, Akhilesh. / Plasma proteome database. Proteomics of Human Body Fluids: Principles, Methods, and Applications. Humana Press Inc., 2007. pp. 129-136
@inbook{b3fb128261ae4f9c89c01985ca7ba82a,
title = "Plasma proteome database",
abstract = "The plasma proteome is one of the most important proteomes from a diagnostic standpoint, as quantitative changes between normal and diseased states can be used to discover novel biomarkers for clinical diagnosis and therapeutic monitoring of diseases. HUPO's Plasma Proteome Project has involved characterization of the plasma proteome by an international consortium using technologies ranging from antibody arrays to mass spectrometry and has helped in the construction of a substantial catalog of plasma proteins. Our group has developed the Plasma Proteome Database (http://www.plasmaproteomedatabase.org) as a comprehensive resource of annotated data for posttranslational modifications, single-nucleotide polymorphisms, tissue expression, subcellular localization, and disease involvement of plasma proteins. This database should serve to facilitate further research to help understand the plasma proteome in health and disease.",
keywords = "annotation, bioinformatics, database, mass spectrometry, plasma, Proteomics",
author = "Malabika Sarker and G. Hanumanthu and Akhilesh Pandey",
year = "2007",
doi = "10.1007/978-1-59745-432-2_6",
language = "English (US)",
isbn = "9781597454322",
pages = "129--136",
booktitle = "Proteomics of Human Body Fluids: Principles, Methods, and Applications",
publisher = "Humana Press Inc.",

}

TY - CHAP

T1 - Plasma proteome database

AU - Sarker, Malabika

AU - Hanumanthu, G.

AU - Pandey, Akhilesh

PY - 2007

Y1 - 2007

N2 - The plasma proteome is one of the most important proteomes from a diagnostic standpoint, as quantitative changes between normal and diseased states can be used to discover novel biomarkers for clinical diagnosis and therapeutic monitoring of diseases. HUPO's Plasma Proteome Project has involved characterization of the plasma proteome by an international consortium using technologies ranging from antibody arrays to mass spectrometry and has helped in the construction of a substantial catalog of plasma proteins. Our group has developed the Plasma Proteome Database (http://www.plasmaproteomedatabase.org) as a comprehensive resource of annotated data for posttranslational modifications, single-nucleotide polymorphisms, tissue expression, subcellular localization, and disease involvement of plasma proteins. This database should serve to facilitate further research to help understand the plasma proteome in health and disease.

AB - The plasma proteome is one of the most important proteomes from a diagnostic standpoint, as quantitative changes between normal and diseased states can be used to discover novel biomarkers for clinical diagnosis and therapeutic monitoring of diseases. HUPO's Plasma Proteome Project has involved characterization of the plasma proteome by an international consortium using technologies ranging from antibody arrays to mass spectrometry and has helped in the construction of a substantial catalog of plasma proteins. Our group has developed the Plasma Proteome Database (http://www.plasmaproteomedatabase.org) as a comprehensive resource of annotated data for posttranslational modifications, single-nucleotide polymorphisms, tissue expression, subcellular localization, and disease involvement of plasma proteins. This database should serve to facilitate further research to help understand the plasma proteome in health and disease.

KW - annotation

KW - bioinformatics

KW - database

KW - mass spectrometry

KW - plasma

KW - Proteomics

UR - http://www.scopus.com/inward/record.url?scp=84920186133&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=84920186133&partnerID=8YFLogxK

U2 - 10.1007/978-1-59745-432-2_6

DO - 10.1007/978-1-59745-432-2_6

M3 - Chapter

AN - SCOPUS:84920186133

SN - 9781597454322

SN - 9781588296573

SP - 129

EP - 136

BT - Proteomics of Human Body Fluids: Principles, Methods, and Applications

PB - Humana Press Inc.

ER -