Physical mapping of chromosome 8p22 markers and their homozygous deletion in a metastatic prostate cancer

G. Steven Bova, Donal MacGrogan, Alina Levy, Sokhom S. Pin, Robert Bookstein, William B Isaacs

Research output: Contribution to journalArticle

Abstract

Numerous studies have implicated the short arm of chromosome 8 as the site of one or more tumor suppressor genes inactivated in carcinogenesis of the prostate, colon, lung, and liver. Previously, we identified a homozygous deletion on chromosome 8p22 in a metastatic prostate cancer. To map this homozygous deletion physically, long-range restriction mapping was performed using yeast artificial chromosomes (YACs) spanning approximately 2 Mb of chromosome band 8p22. Subcloned genomic DNA and cDNA probes isolated by hybrid capture from these YACs were mapped in relation to one another, reinforcing map integrity. Mapped single-copy probes from the region were then applied to DNA isolated from a metastatic prostate cancer containing a chromosome 8p22 homozygous deletion and indicated that its deletion spans 730-970 kb. Candidate genes PRLTS (PDGF-receptor β-like tumor suppressor) and CTSB (cathepsin B) are located outside the region of homozygous deletion. Genethon marker D8S549 is located approximately at the center of this region of homozygous deletion. Two new microsatellite polymorphisms, D8S1991 and D8S1992, also located within the region of homozygous deletion on chromosome 8p22, are described. Physical mapping places cosmid CI8-2644 telomeric to MSR (macrophage scavenger receptor), the reverse of a previously published map, altering the interpretation of published deletion studies. This work should prove helpful in the identification of candidate tumor suppressor genes in this region.

Original languageEnglish (US)
Pages (from-to)46-54
Number of pages9
JournalGenomics
Volume35
Issue number1
DOIs
StatePublished - Jul 1 1996

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Yeast Artificial Chromosomes
Chromosome Deletion
Tumor Suppressor Genes
Genetic Markers
Prostatic Neoplasms
Platelet-Derived Growth Factor Receptors
Scavenger Receptors
Chromosomes, Human, Pair 8
Cathepsin B
Restriction Mapping
Cosmids
Chromosomes, Human, Pair 2
DNA Probes
Microsatellite Repeats
Prostate
Colon
Carcinogenesis
Complementary DNA
Chromosomes
Lung

ASJC Scopus subject areas

  • Genetics

Cite this

Physical mapping of chromosome 8p22 markers and their homozygous deletion in a metastatic prostate cancer. / Bova, G. Steven; MacGrogan, Donal; Levy, Alina; Pin, Sokhom S.; Bookstein, Robert; Isaacs, William B.

In: Genomics, Vol. 35, No. 1, 01.07.1996, p. 46-54.

Research output: Contribution to journalArticle

Bova, G. Steven ; MacGrogan, Donal ; Levy, Alina ; Pin, Sokhom S. ; Bookstein, Robert ; Isaacs, William B. / Physical mapping of chromosome 8p22 markers and their homozygous deletion in a metastatic prostate cancer. In: Genomics. 1996 ; Vol. 35, No. 1. pp. 46-54.
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