Abstract
Pavian is a web application for exploring classification results from metagenomics experiments. With Pavian, researchers can analyze, visualize and transform results from various classifiers-such as Kraken, Centrifuge and MethaPhlAn-using interactive data tables, heatmaps and Sankey flow diagrams. An interactive alignment coverage viewer can help in the validation of matches to a particular genome, which can be crucial when using metagenomics experiments for pathogen detection.
Original language | English (US) |
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Pages (from-to) | 1303-1304 |
Number of pages | 2 |
Journal | Bioinformatics |
Volume | 36 |
Issue number | 4 |
DOIs | |
State | Published - Feb 15 2020 |
ASJC Scopus subject areas
- Statistics and Probability
- Biochemistry
- Molecular Biology
- Computer Science Applications
- Computational Theory and Mathematics
- Computational Mathematics