Pavian: Interactive analysis of metagenomics data for microbiome studies and pathogen identification

Florian P. Breitwieser, Steven L. Salzberg

Research output: Contribution to journalArticlepeer-review

Abstract

Pavian is a web application for exploring classification results from metagenomics experiments. With Pavian, researchers can analyze, visualize and transform results from various classifiers-such as Kraken, Centrifuge and MethaPhlAn-using interactive data tables, heatmaps and Sankey flow diagrams. An interactive alignment coverage viewer can help in the validation of matches to a particular genome, which can be crucial when using metagenomics experiments for pathogen detection.

Original languageEnglish (US)
Pages (from-to)1303-1304
Number of pages2
JournalBioinformatics
Volume36
Issue number4
DOIs
StatePublished - Feb 15 2020

ASJC Scopus subject areas

  • Statistics and Probability
  • Biochemistry
  • Molecular Biology
  • Computer Science Applications
  • Computational Theory and Mathematics
  • Computational Mathematics

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