OMSSAGUI: An open-source user interface component to configure and run the OMSSA search engine

Ravi Tharakan; Lennart Martens; Jennifer E. Van Eyk; David R. Graham

doi:10.1002/pmic.200701126

OMSSAGUI: An open-source user interface component to configure and run the OMSSA search engine

Ravi Tharakan, Lennart Martens, Jennifer E. Van Eyk, David R. Graham

Research output: Contribution to journal › Article › peer-review

12 Scopus citations

Abstract

We here present a user-friendly and extremely lightweight tool that can serve as a stand-alone front-end for the Open MS Search Algorithm (OMSSA) search engine, or that can directly be used as part of an informatics processing pipeline for MS driven proteomics. The OMSSA graphical user interface (OMSSAGUI) tool is written in Java, and is supported on Windows, Linux, and OSX platforms. It is an open source under the Apache 2 license and can be downloaded from http://code.google.com/p/mass-spec-gui/.

Original language	English (US)
Pages (from-to)	2376-2378
Number of pages	3
Journal	Proteomics
Volume	8
Issue number	12
DOIs	https://doi.org/10.1002/pmic.200701126
State	Published - Jun 2008
Externally published	Yes

Keywords

Bioinformatics
Protein identification

ASJC Scopus subject areas

Biochemistry
Molecular Biology

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10.1002/pmic.200701126

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abstract = "We here present a user-friendly and extremely lightweight tool that can serve as a stand-alone front-end for the Open MS Search Algorithm (OMSSA) search engine, or that can directly be used as part of an informatics processing pipeline for MS driven proteomics. The OMSSA graphical user interface (OMSSAGUI) tool is written in Java, and is supported on Windows, Linux, and OSX platforms. It is an open source under the Apache 2 license and can be downloaded from http://code.google.com/p/mass-spec-gui/.",

keywords = "Bioinformatics, Protein identification",

author = "Ravi Tharakan and Lennart Martens and {Van Eyk}, {Jennifer E.} and Graham, {David R.}",

year = "2008",

month = jun,

doi = "10.1002/pmic.200701126",

language = "English (US)",

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AU - Tharakan, Ravi

AU - Martens, Lennart

AU - Van Eyk, Jennifer E.

AU - Graham, David R.

PY - 2008/6

Y1 - 2008/6

N2 - We here present a user-friendly and extremely lightweight tool that can serve as a stand-alone front-end for the Open MS Search Algorithm (OMSSA) search engine, or that can directly be used as part of an informatics processing pipeline for MS driven proteomics. The OMSSA graphical user interface (OMSSAGUI) tool is written in Java, and is supported on Windows, Linux, and OSX platforms. It is an open source under the Apache 2 license and can be downloaded from http://code.google.com/p/mass-spec-gui/.

AB - We here present a user-friendly and extremely lightweight tool that can serve as a stand-alone front-end for the Open MS Search Algorithm (OMSSA) search engine, or that can directly be used as part of an informatics processing pipeline for MS driven proteomics. The OMSSA graphical user interface (OMSSAGUI) tool is written in Java, and is supported on Windows, Linux, and OSX platforms. It is an open source under the Apache 2 license and can be downloaded from http://code.google.com/p/mass-spec-gui/.

KW - Bioinformatics

KW - Protein identification

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JO - Proteomics

JF - Proteomics

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ER -

OMSSAGUI: An open-source user interface component to configure and run the OMSSA search engine

Abstract

Keywords

ASJC Scopus subject areas

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