Near-complete genome sequences of several new norovirus genogroup II genotypes

Preeti Chhabra; Kshama Aswath; Nikail Collins; Tahmeed Ahmed; Maribel Paredes Olórtegui; Margaret Kosek; Elizabeth Cebelinski; Phil J. Cooper; Filemon Bucardo; Maria Renee Lopez; Christina J. Castro; Rachel L. Marine; Terry Fei Fan Ng; Jan Vinjé

doi:10.1128/genomeA.00007-18

Near-complete genome sequences of several new norovirus genogroup II genotypes

Preeti Chhabra, Kshama Aswath, Nikail Collins, Tahmeed Ahmed, Maribel Paredes Olórtegui, Margaret Kosek, Elizabeth Cebelinski, Phil J. Cooper, Filemon Bucardo, Maria Renee Lopez, Christina J. Castro, Rachel L. Marine, Terry Fei Fan Ng, Jan Vinjé

Bloomberg School of Public Health

Research output: Contribution to journal › Article › peer-review

15 Scopus citations

Abstract

We report here the near-complete genome sequences of 13 norovirus strains detected in stool samples from patients with acute gastroenteritis from Bangladesh, Ecuador, Guatemala, Peru, Nicaragua, and the United States that are classified into one existing (genotype II.22 [GII.22]), 3 novel (GII.23, GII.24 and GII.25), and 3 tentative novel (GII.NA1, GII.NA2, and GII.NA3) genotypes.

Original language	English (US)
Article number	e00007-18
Journal	Genome Announcements
Volume	6
Issue number	6
DOIs	https://doi.org/10.1128/genomeA.00007-18
State	Published - Feb 1 2018

ASJC Scopus subject areas

Molecular Biology
Genetics

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10.1128/genomeA.00007-18

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title = "Near-complete genome sequences of several new norovirus genogroup II genotypes",

abstract = "We report here the near-complete genome sequences of 13 norovirus strains detected in stool samples from patients with acute gastroenteritis from Bangladesh, Ecuador, Guatemala, Peru, Nicaragua, and the United States that are classified into one existing (genotype II.22 [GII.22]), 3 novel (GII.23, GII.24 and GII.25), and 3 tentative novel (GII.NA1, GII.NA2, and GII.NA3) genotypes.",

author = "Preeti Chhabra and Kshama Aswath and Nikail Collins and Tahmeed Ahmed and Ol{\'o}rtegui, {Maribel Paredes} and Margaret Kosek and Elizabeth Cebelinski and Cooper, {Phil J.} and Filemon Bucardo and Lopez, {Maria Renee} and Castro, {Christina J.} and Marine, {Rachel L.} and Ng, {Terry Fei Fan} and Jan Vinj{\'e}",

note = "Funding Information: aSynergy, Atlanta, Georgia, USA bCDC Foundation, Atlanta, Georgia, USA cAtlanta Research and Education Foundation, Decatur, Georgia, USA dInternational Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh eUnidad de Investigaciones Biom{\'e}dicas, Iquitos, Peru fJohns Hopkins University, Baltimore, Maryland, USA gMinnesota Department of Health, St. Paul, Minnesota, USA hPontificia Universidad Cat{\'o}lica del Ecuador, Quito, Ecuador iNational Autonomous University of Nicaragua, Le{\'o}n, Nicaragua jUniversidad del Valle de Guatemala, Guatemala City, Guatemala kOak Ridge Institute for Science and Education, Oak Ridge, Tennessee, USA lDivision of Viral Diseases, CDC, Atlanta, Georgia, USA",

year = "2018",

month = feb,

day = "1",

doi = "10.1128/genomeA.00007-18",

language = "English (US)",

volume = "6",

journal = "Genome Announcements",

issn = "2169-8287",

publisher = "American Society for Microbiology",

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T1 - Near-complete genome sequences of several new norovirus genogroup II genotypes

AU - Chhabra, Preeti

AU - Aswath, Kshama

AU - Collins, Nikail

AU - Ahmed, Tahmeed

AU - Olórtegui, Maribel Paredes

AU - Kosek, Margaret

AU - Cebelinski, Elizabeth

AU - Cooper, Phil J.

AU - Bucardo, Filemon

AU - Lopez, Maria Renee

AU - Castro, Christina J.

AU - Marine, Rachel L.

AU - Ng, Terry Fei Fan

AU - Vinjé, Jan

N1 - Funding Information: aSynergy, Atlanta, Georgia, USA bCDC Foundation, Atlanta, Georgia, USA cAtlanta Research and Education Foundation, Decatur, Georgia, USA dInternational Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh eUnidad de Investigaciones Biomédicas, Iquitos, Peru fJohns Hopkins University, Baltimore, Maryland, USA gMinnesota Department of Health, St. Paul, Minnesota, USA hPontificia Universidad Católica del Ecuador, Quito, Ecuador iNational Autonomous University of Nicaragua, León, Nicaragua jUniversidad del Valle de Guatemala, Guatemala City, Guatemala kOak Ridge Institute for Science and Education, Oak Ridge, Tennessee, USA lDivision of Viral Diseases, CDC, Atlanta, Georgia, USA

PY - 2018/2/1

Y1 - 2018/2/1

N2 - We report here the near-complete genome sequences of 13 norovirus strains detected in stool samples from patients with acute gastroenteritis from Bangladesh, Ecuador, Guatemala, Peru, Nicaragua, and the United States that are classified into one existing (genotype II.22 [GII.22]), 3 novel (GII.23, GII.24 and GII.25), and 3 tentative novel (GII.NA1, GII.NA2, and GII.NA3) genotypes.

AB - We report here the near-complete genome sequences of 13 norovirus strains detected in stool samples from patients with acute gastroenteritis from Bangladesh, Ecuador, Guatemala, Peru, Nicaragua, and the United States that are classified into one existing (genotype II.22 [GII.22]), 3 novel (GII.23, GII.24 and GII.25), and 3 tentative novel (GII.NA1, GII.NA2, and GII.NA3) genotypes.

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Near-complete genome sequences of several new norovirus genogroup II genotypes

Abstract

ASJC Scopus subject areas

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