Multiplexed protein analysis using encoded antibody-conjugated microbeads

Nora Theilacker, Eric E. Roller, Kristopher D. Barbee, Matthias Franzreb, Xiaohua Huang

Research output: Contribution to journalArticlepeer-review

24 Scopus citations


We describe a method for multiplexed analysis of proteins using fluorescently encoded microbeads. The sensitivity of our method is comparable to the sensitivity obtained by enzyme-linked immunosorbent assay while only 5 μl sample volumes are needed. Streptavidin-coated, 1 μm beads are encoded with a combination of fluorophores at different intensity levels. As a proof of concept, we demonstrate that 27 microbead populations can be readily encoded by affinity conjugation using three intensity levels for each of three different biotinylated fluorescent dyes. Four populations of encoded microbeads are further conjugated with biotinylated capture antibodies and then combined and immobilized in a microfluidic flow cell for multiplexed protein analysis. Using four uniquely encoded microbead populations, we show that a cancer biomarker and three cytokine proteins can be analysed quantitatively in the picogram per millilitre range by fluorescence microscopy in a single assay. Our method will allow for the fabrication of high density, bead-based antibody arrays for multiplexed protein analysis using integrated microfluidic devices and automated sample processing.

Original languageEnglish (US)
Pages (from-to)1104-1113
Number of pages10
JournalJournal of the Royal Society Interface
Issue number61
StatePublished - Aug 7 2011
Externally publishedYes


  • Combinatorial encoding
  • Microbeads
  • Multiplexed protein immunoassays

ASJC Scopus subject areas

  • Biotechnology
  • Biophysics
  • Bioengineering
  • Biomaterials
  • Biochemistry
  • Biomedical Engineering


Dive into the research topics of 'Multiplexed protein analysis using encoded antibody-conjugated microbeads'. Together they form a unique fingerprint.

Cite this