Multi-scale modeling of gene regulatory networks via integration of temporal and topological biological data.

George Dimitrakopoulos, Kyriakos Sgarbas, Konstantina Dimitrakopoulou, Andrei Dragomir, Anastasios Bezerianos, Ioannis A. Maraziotis

Research output: Contribution to journalArticle

Abstract

Regulome is the dynamic network representation of the regulatory interplay among genes, proteins and other cellular components that control cellular processes. Reconstruction of gene regulatory networks (GRN) delineates one of the main objectives of Systems Biology towards understanding the organization of regulome. Significant progress has been reported the last years regarding GRN reconstruction methods, but the majority of them either consider information originating solely from gene expression data or/and are applied on a small fraction of the experimental dataset. In this paper, we will describe an integrative method, utilizing both temporal information arriving from time-series gene expression profiles, as well as topological properties of protein networks. The proposed methodology detects relations among either groups of genes or specific genes depending on the level of abstraction or resolution requested. Application on real data proved the ability of the method to extract relations in accordance with current biological knowledge as well as discriminate between different experimental conditions.

Original languageEnglish (US)
Pages (from-to)1242-1245
Number of pages4
JournalConference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference
Volume2012
StatePublished - 2012
Externally publishedYes

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Gene Regulatory Networks
Genes
Systems Biology
Gene expression
Transcriptome
Proteins
Gene Expression
Time series

ASJC Scopus subject areas

  • Computer Vision and Pattern Recognition
  • Signal Processing
  • Biomedical Engineering
  • Health Informatics

Cite this

Multi-scale modeling of gene regulatory networks via integration of temporal and topological biological data. / Dimitrakopoulos, George; Sgarbas, Kyriakos; Dimitrakopoulou, Konstantina; Dragomir, Andrei; Bezerianos, Anastasios; Maraziotis, Ioannis A.

In: Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference, Vol. 2012, 2012, p. 1242-1245.

Research output: Contribution to journalArticle

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