MPTP’s Pathway of Toxicity Indicates Central Role of Transcription Factor SP1

Alexandra Maertens, Thomas Luechtefeld, Andre Kleensang, Thomas Hartung

Research output: Contribution to journalArticle

Abstract

Deriving a Pathway of Toxicity from transcriptomic data remains a challenging task. We explore the use of weighted gene correlation network analysis (WGCNA) to extract an initial network from a small microarray study of MPTP toxicity in mice. Five modules were statistically significant; each module was analyzed for gene signatures in the Chemical and Genetic Perturbation subset of the Molecular Signatures Database as well as for over-represented transcription factor binding sites and WGCNA clustered probes by function and captured pathways relevant to neurodegenerative disorders. The resulting network was analyzed for transcription factor candidates, which were narrowed down via text-mining for relevance to the disease model, and then combined with the large-scale interaction FANTOM4 database to generate a genetic regulatory network. Modules were enriched for transcription factors relevant to Parkinson’s disease. Transcription factors significantly improved the number of genes that could be connected in a given component. For each module, the transcription factor that had, by far, the highest number of interactions was SP1, and it also had substantial experimental evidence of interactions. This analysis both captures much of the known biology of MPTP toxicity and suggests several candidates for further study. Furthermore, the analysis strongly suggests that SP1 plays a central role in coordinating the cellular response to MPTP toxicity.

Original languageEnglish (US)
Pages (from-to)743-755
Number of pages13
JournalArchives of Toxicology
Volume89
Issue number5
DOIs
StatePublished - May 1 2015

Fingerprint

1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridine
Toxicity
Transcription Factors
Genes
Gene Regulatory Networks
Electric network analysis
Chemical Databases
Data Mining
Microarrays
Neurodegenerative Diseases
Parkinson Disease
Binding Sites
Databases

Keywords

  • GRN
  • MPTP
  • Parkinson’s disease
  • Pathway of toxicity
  • SP1
  • WGCNA

ASJC Scopus subject areas

  • Toxicology
  • Health, Toxicology and Mutagenesis

Cite this

MPTP’s Pathway of Toxicity Indicates Central Role of Transcription Factor SP1. / Maertens, Alexandra; Luechtefeld, Thomas; Kleensang, Andre; Hartung, Thomas.

In: Archives of Toxicology, Vol. 89, No. 5, 01.05.2015, p. 743-755.

Research output: Contribution to journalArticle

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