Molecular genotyping of Mycobacterium tuberculosis in Xi'an, China, using MIRU-VNTR typing

A. Zhou, M. Nawaz, X. Xue, Petros Karakousis, Yufeng Yao, Jiru Xu

Research output: Contribution to journalArticle

Abstract

SETTING: The molecular genotyping of Mycobacterium tuberculosis is expected to lead to a better understanding of M. tuberculosis transmission in Xi'an, one of the largest cities in Western China. OBJECTIVE: To characterize the population of M. tuberculosis strains circulating in Xi'an and to evaluate the feasibility of the mycobacterial interspersed repetitive units-variable number of tandem repeats (MIRU-VNTR) typing method. DESIGN: A total of 195 M. tuberculosis clinical isolates from Xi'an were genotyped using spoligotyping and MIRU-VNTR. RESULTS: Thirty-two different genotypes were identified by spoligotyping, with the Beijing family identified as the largest lineage (84.6%), followed by the T1 (3.08%), T2 (1.54%), H3 (1.03%) and U (1.03%) families. The Hunter-Gaston discriminatory index (HGDI) of spoligotyping is low (HGDI = 0.392). In contrast, 15-locus MIRU-VNTR shows a higher discriminatory power (HGDI = 0.998) than 12-locus MIRU-VNTR (HGDI = 0.948). By replacing the ETR C locus with the MIRU39 locus, the discriminatory power of 15-locus MIRU-VNTR is increased to 0.999. CONCLUSIONS: The Beijing family accounts for the vast majority of M. tuberculosis isolates in Xi'an, China. The modified 15-locus MIRU-VNTR showed high HGDI and can be used as a first-line genotyping method in combination with spoligotyping in routine epidemiological investigations in Xi'an, China.

Original languageEnglish (US)
Pages (from-to)517-522
Number of pages6
JournalInternational Journal of Tuberculosis and Lung Disease
Volume15
Issue number4
DOIs
Publication statusPublished - Apr 2011

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Keywords

  • MIRU-VNTR genotyping
  • Molecular epidemiology
  • Mycobacterium tuberculosis

ASJC Scopus subject areas

  • Pulmonary and Respiratory Medicine
  • Infectious Diseases

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