Molecular crowding stabilizes folded RNA structure by the excluded volume effect

Duncan Kilburn, Joon Ho Roh, Liang Guo, Robert M. Briber, Sarah A. Woodson

Research output: Contribution to journalArticle

Abstract

Crowder molecules in solution alter the equilibrium between folded and unfolded states of biological macromolecules. It is therefore critical to account for the influence of these other molecules when describing the folding of RNA inside the cell. Small angle X-ray scattering experiments are reported on a 64 kDa bacterial group I ribozyme in the presence of polyethylene-glycol 1000 (PEG-1000), a molecular crowder with an average molecular weight of 1000 Da. In agreement with expected excluded volume effects, PEG favors more compact RNA structures. First, the transition from the unfolded to the folded (more compact) state occurs at lower MgCl2 concentrations in PEG. Second, the radius of gyration of the unfolded RNA decreases from 76 to 64 Å as the PEG concentration increases from 0 to 20% wt/vol. Changes to water and ion activities were measured experimentally, and theoretical models were used to evaluate the excluded volume. We conclude that the dominant influence of the PEG crowder on the folding process is the excluded volume effect.

Original languageEnglish (US)
Pages (from-to)8690-8696
Number of pages7
JournalJournal of the American Chemical Society
Volume132
Issue number25
DOIs
StatePublished - Jun 30 2010

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ASJC Scopus subject areas

  • Catalysis
  • Chemistry(all)
  • Biochemistry
  • Colloid and Surface Chemistry

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