Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model reproducibility, interoperability, and data sharing

T. A. Quinn; S. Granite; M. A. Allessie; C. Antzelevitch; C. Bollensdorff; G. Bub; R. A.B. Burton; E. Cerbai; P. S. Chen; M. Delmar; D. DiFrancesco; Y. E. Earm; I. R. Efimov; M. Egger; E. Entcheva; M. Fink; R. Fischmeister; M. R. Franz; A. Garny; W. R. Giles; T. Hannes; S. E. Harding; P. J. Hunter; G. Iribe; J. Jalife; C. R. Johnson; R. S. Kass; I. Kodama; G. Koren; P. Lord; V. S. Markhasin; S. Matsuoka; A. D. McCulloch; G. R. Mirams; G. E. Morley; S. Nattel; D. Noble; S. P. Olesen; A. V. Panfilov; N. A. Trayanova; U. Ravens; S. Richard; D. S. Rosenbaum; Y. Rudy; F. Sachs; F. B. Sachse; D. A. Saint; U. Schotten; O. Solovyova; P. Taggart; L. Tung; A. Varró; P. G. Volders; K. Wang; J. N. Weiss; E. Wettwer; E. White; R. Wilders; Rai Winslow; P. Kohl

doi:10.1016/j.pbiomolbio.2011.07.001

Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model reproducibility, interoperability, and data sharing

T. A. Quinn, S. Granite, M. A. Allessie, C. Antzelevitch, C. Bollensdorff, G. Bub, R. A.B. Burton, E. Cerbai, P. S. Chen, M. Delmar, D. DiFrancesco, Y. E. Earm, I. R. Efimov, M. Egger, E. Entcheva, M. Fink, R. Fischmeister, M. R. Franz, A. Garny, W. R. GilesT. Hannes, S. E. Harding, P. J. Hunter, G. Iribe, J. Jalife, C. R. Johnson, R. S. Kass, I. Kodama, G. Koren, P. Lord, V. S. Markhasin, S. Matsuoka, A. D. McCulloch, G. R. Mirams, G. E. Morley, S. Nattel, D. Noble, S. P. Olesen, A. V. Panfilov, N. A. Trayanova, U. Ravens, S. Richard, D. S. Rosenbaum, Y. Rudy, F. Sachs, F. B. Sachse, D. A. Saint, U. Schotten, O. Solovyova, P. Taggart, L. Tung, A. Varró, P. G. Volders, K. Wang, J. N. Weiss, E. Wettwer, E. White, R. Wilders, Rai Winslow, P. Kohl

School of Medicine

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Abstract

Cardiac experimental electrophysiology is in need of a well-defined Minimum Information Standard for recording, annotating, and reporting experimental data. As a step towards establishing this, we present a draft standard, called Minimum Information about a Cardiac Electrophysiology Experiment (MICEE). The ultimate goal is to develop a useful tool for cardiac electrophysiologists which facilitates and improves dissemination of the minimum information necessary for reproduction of cardiac electrophysiology research, allowing for easier comparison and utilisation of findings by others. It is hoped that this will enhance the integration of individual results into experimental, computational, and conceptual models. In its present form, this draft is intended for assessment and development by the research community. We invite the reader to join this effort, and, if deemed productive, implement the Minimum Information about a Cardiac Electrophysiology Experiment standard in their own work.

Original language	English (US)
Pages (from-to)	4-10
Number of pages	7
Journal	Progress in Biophysics and Molecular Biology
Volume	107
Issue number	1
DOIs	https://doi.org/10.1016/j.pbiomolbio.2011.07.001
State	Published - Oct 2011

Keywords

Cardiac electrophysiology
Computational modelling
Data sharing
Integration
Minimum Information Standard
Reproducibility

ASJC Scopus subject areas

Biophysics
Molecular Biology

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10.1016/j.pbiomolbio.2011.07.001

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Quinn, T. A., Granite, S., Allessie, M. A., Antzelevitch, C., Bollensdorff, C., Bub, G., Burton, R. A. B., Cerbai, E., Chen, P. S., Delmar, M., DiFrancesco, D., Earm, Y. E., Efimov, I. R., Egger, M., Entcheva, E., Fink, M., Fischmeister, R., Franz, M. R., Garny, A., ... Kohl, P. (2011). Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model reproducibility, interoperability, and data sharing. Progress in Biophysics and Molecular Biology, 107(1), 4-10. https://doi.org/10.1016/j.pbiomolbio.2011.07.001

Quinn, TA, Granite, S, Allessie, MA, Antzelevitch, C, Bollensdorff, C, Bub, G, Burton, RAB, Cerbai, E, Chen, PS, Delmar, M, DiFrancesco, D, Earm, YE, Efimov, IR, Egger, M, Entcheva, E, Fink, M, Fischmeister, R, Franz, MR, Garny, A, Giles, WR, Hannes, T, Harding, SE, Hunter, PJ, Iribe, G, Jalife, J, Johnson, CR, Kass, RS, Kodama, I, Koren, G, Lord, P, Markhasin, VS, Matsuoka, S, McCulloch, AD, Mirams, GR, Morley, GE, Nattel, S, Noble, D, Olesen, SP, Panfilov, AV, Trayanova, NA, Ravens, U, Richard, S, Rosenbaum, DS, Rudy, Y, Sachs, F, Sachse, FB, Saint, DA, Schotten, U, Solovyova, O, Taggart, P, Tung, L, Varró, A, Volders, PG, Wang, K, Weiss, JN, Wettwer, E, White, E, Wilders, R, Winslow, R & Kohl, P 2011, 'Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model reproducibility, interoperability, and data sharing', Progress in Biophysics and Molecular Biology, vol. 107, no. 1, pp. 4-10. https://doi.org/10.1016/j.pbiomolbio.2011.07.001

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title = "Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model reproducibility, interoperability, and data sharing",

abstract = "Cardiac experimental electrophysiology is in need of a well-defined Minimum Information Standard for recording, annotating, and reporting experimental data. As a step towards establishing this, we present a draft standard, called Minimum Information about a Cardiac Electrophysiology Experiment (MICEE). The ultimate goal is to develop a useful tool for cardiac electrophysiologists which facilitates and improves dissemination of the minimum information necessary for reproduction of cardiac electrophysiology research, allowing for easier comparison and utilisation of findings by others. It is hoped that this will enhance the integration of individual results into experimental, computational, and conceptual models. In its present form, this draft is intended for assessment and development by the research community. We invite the reader to join this effort, and, if deemed productive, implement the Minimum Information about a Cardiac Electrophysiology Experiment standard in their own work.",

keywords = "Cardiac electrophysiology, Computational modelling, Data sharing, Integration, Minimum Information Standard, Reproducibility",

author = "Quinn, {T. A.} and S. Granite and Allessie, {M. A.} and C. Antzelevitch and C. Bollensdorff and G. Bub and Burton, {R. A.B.} and E. Cerbai and Chen, {P. S.} and M. Delmar and D. DiFrancesco and Earm, {Y. E.} and Efimov, {I. R.} and M. Egger and E. Entcheva and M. Fink and R. Fischmeister and Franz, {M. R.} and A. Garny and Giles, {W. R.} and T. Hannes and Harding, {S. E.} and Hunter, {P. J.} and G. Iribe and J. Jalife and Johnson, {C. R.} and Kass, {R. S.} and I. Kodama and G. Koren and P. Lord and Markhasin, {V. S.} and S. Matsuoka and McCulloch, {A. D.} and Mirams, {G. R.} and Morley, {G. E.} and S. Nattel and D. Noble and Olesen, {S. P.} and Panfilov, {A. V.} and Trayanova, {N. A.} and U. Ravens and S. Richard and Rosenbaum, {D. S.} and Y. Rudy and F. Sachs and Sachse, {F. B.} and Saint, {D. A.} and U. Schotten and O. Solovyova and P. Taggart and L. Tung and A. Varr{\'o} and Volders, {P. G.} and K. Wang and Weiss, {J. N.} and E. Wettwer and E. White and R. Wilders and Rai Winslow and P. Kohl",

note = "Funding Information: This work is supported by the Engineering and Physical Science Research Council of the United Kingdom, the British Heart Foundation , the European Commission FP7 Virtual Physiological Human Initiative (Network of Excellence, preDiCT, euHeart), and National Institutes of Health grants U54HG004028 , R01HL103727 , and R24HL085343 . ",

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month = oct,

doi = "10.1016/j.pbiomolbio.2011.07.001",

language = "English (US)",

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T1 - Minimum Information about a Cardiac Electrophysiology Experiment (MICEE)

T2 - Standardised reporting for model reproducibility, interoperability, and data sharing

AU - Quinn, T. A.

AU - Granite, S.

AU - Allessie, M. A.

AU - Antzelevitch, C.

AU - Bollensdorff, C.

AU - Bub, G.

AU - Burton, R. A.B.

AU - Cerbai, E.

AU - Chen, P. S.

AU - Delmar, M.

AU - DiFrancesco, D.

AU - Earm, Y. E.

AU - Efimov, I. R.

AU - Egger, M.

AU - Entcheva, E.

AU - Fink, M.

AU - Fischmeister, R.

AU - Franz, M. R.

AU - Garny, A.

AU - Giles, W. R.

AU - Hannes, T.

AU - Harding, S. E.

AU - Hunter, P. J.

AU - Iribe, G.

AU - Jalife, J.

AU - Johnson, C. R.

AU - Kass, R. S.

AU - Kodama, I.

AU - Koren, G.

AU - Lord, P.

AU - Markhasin, V. S.

AU - Matsuoka, S.

AU - McCulloch, A. D.

AU - Mirams, G. R.

AU - Morley, G. E.

AU - Nattel, S.

AU - Noble, D.

AU - Olesen, S. P.

AU - Panfilov, A. V.

AU - Trayanova, N. A.

AU - Ravens, U.

AU - Richard, S.

AU - Rosenbaum, D. S.

AU - Rudy, Y.

AU - Sachs, F.

AU - Sachse, F. B.

AU - Saint, D. A.

AU - Schotten, U.

AU - Solovyova, O.

AU - Taggart, P.

AU - Tung, L.

AU - Varró, A.

AU - Volders, P. G.

AU - Wang, K.

AU - Weiss, J. N.

AU - Wettwer, E.

AU - White, E.

AU - Wilders, R.

AU - Winslow, Rai

AU - Kohl, P.

N1 - Funding Information: This work is supported by the Engineering and Physical Science Research Council of the United Kingdom, the British Heart Foundation , the European Commission FP7 Virtual Physiological Human Initiative (Network of Excellence, preDiCT, euHeart), and National Institutes of Health grants U54HG004028 , R01HL103727 , and R24HL085343 .

PY - 2011/10

Y1 - 2011/10

N2 - Cardiac experimental electrophysiology is in need of a well-defined Minimum Information Standard for recording, annotating, and reporting experimental data. As a step towards establishing this, we present a draft standard, called Minimum Information about a Cardiac Electrophysiology Experiment (MICEE). The ultimate goal is to develop a useful tool for cardiac electrophysiologists which facilitates and improves dissemination of the minimum information necessary for reproduction of cardiac electrophysiology research, allowing for easier comparison and utilisation of findings by others. It is hoped that this will enhance the integration of individual results into experimental, computational, and conceptual models. In its present form, this draft is intended for assessment and development by the research community. We invite the reader to join this effort, and, if deemed productive, implement the Minimum Information about a Cardiac Electrophysiology Experiment standard in their own work.

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KW - Cardiac electrophysiology

KW - Computational modelling

KW - Data sharing

KW - Integration

KW - Minimum Information Standard

KW - Reproducibility

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Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): Standardised reporting for model reproducibility, interoperability, and data sharing

Abstract

Keywords

ASJC Scopus subject areas

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