Intra-individual change over time in DNA methylation with familial clustering

Hans T. Bjornsson, Martin I. Sigurdsson, M. Daniele Fallin, Rafael A. Irizarry, Thor Aspelund, Hengmi Cui, Wenqiang Yu, Michael A. Rongione, Tomas J. Ekström, Tamara B. Harris, Lenore J. Launer, Gudny Eiriksdottir, Mark F. Leppert, Carmen Sapienza, Vilmundur Gudnason, Andrew P. Feinberg

Research output: Contribution to journalArticlepeer-review

Abstract

Context: Changes over time in epigenetic marks, which are modifications of DNA such as by DNA methylation, may help explain the late onset of common human diseases. However, changes in methylation or other epigenetic marks over time in a given individual have not yet been investigated. Objectives: To determine whether there are longitudinal changes in global DNA methylation in individuals and to evaluate whether methylation maintenance demonstrates familial clustering. Design, Setting, and Participants: We measured global DNA methylation by luminometric methylation assay, a quantitative measurement of genome-wide DNA methylation, on DNA sampled at 2 visits on average 11 years apart in 111 individuals from an Icelandic cohort (1991 and 2002-2005) and on average 16 years apart in 126 individuals from a Utah sample (1982-1985 and 1997-2005). Main Outcome Measure: Global methylation changes over time. Results: Twenty-nine percent of Icelandic individuals showed greater than 10% methylation change over time (P<.001). The family-based Utah sample also showed intraindividual changes over time, and further demonstrated familial clustering of methylation change (P=.003). The family showing the greatest global methylation loss also demonstrated the greatest loss of gene-specific methylation by a separate methylation assay. Conclusion: These data indicate that methylation changes over time and suggest that methylation maintenance may be under genetic control.

Original languageEnglish (US)
Pages (from-to)2877-2883
Number of pages7
JournalJAMA - Journal of the American Medical Association
Volume299
Issue number24
DOIs
StatePublished - Jun 25 2008

ASJC Scopus subject areas

  • Medicine(all)

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