Interactive web-based identification and visualization of transcript shared sequences

Alaleh Azhir, Louis Henri Merino, David Nauen

Research output: Contribution to journalArticle

Abstract

We have developed TraC (Transcript Consensus), a web-based tool for detecting and visualizing shared sequences among two or more mRNA transcripts such as splice variants. Results including exon-exon boundaries are returned in a highly intuitive, data-rich, interactive plot that permits users to explore the similarities and differences of multiple transcript sequences. The online tool (http://labs.pathology.jhu.edu/nauen/trac/) is free to use. The source code is freely available for download (https://github.com/nauenlab/TraC).

Original languageEnglish (US)
JournalGenomics
DOIs
StateAccepted/In press - Jan 1 2018

Keywords

  • Alternative splicing
  • RNA
  • Splice variant
  • Visualization

ASJC Scopus subject areas

  • Genetics

Fingerprint Dive into the research topics of 'Interactive web-based identification and visualization of transcript shared sequences'. Together they form a unique fingerprint.

  • Cite this