Intensity inhomogeneity correction of macular OCT using N3 and retinal flatspace

Andrew Lang, Aaron Carass, Bruno M. Jedynak, Sharon Solomon, Peter Calabresi, Jerry Ladd Prince

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

As optical coherence tomography (OCT) has increasingly become a standard modality for imaging the retina, automated algorithms for processing OCT data have become necessary to do large scale studies looking for changes in specific layers. To provide accurate results, many of these algorithms rely on the consistency of layer intensities within a scan. Unfortunately, OCT data often exhibits inhomogeneity in a given layer's intensities, both within and between images. This problem negatively affects the performance of segmentation algorithms and little prior work has been done to correct this data. In this work, we adapt the N3 framework for intensity inhomogeneity correction, which was originally developed to correct MRI data, to work for macular OCT data. We first transform the data to a flattened macular space to create a template intensity profile for each layer giving us an accurate initial estimate of the gain field. N3 will then produce a smoothly varying field to correct the data. We show that our method is able to both accurately recover synthetically generated gain fields and improves the stability of the layer intensities.

Original languageEnglish (US)
Title of host publication2016 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016 - Proceedings
PublisherIEEE Computer Society
Pages197-200
Number of pages4
Volume2016-June
ISBN (Electronic)9781479923502
DOIs
StatePublished - Jun 15 2016
Event2016 IEEE 13th International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016 - Prague, Czech Republic
Duration: Apr 13 2016Apr 16 2016

Other

Other2016 IEEE 13th International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016
CountryCzech Republic
CityPrague
Period4/13/164/16/16

Fingerprint

Optical tomography
Optical Coherence Tomography
Magnetic resonance imaging
Retina
Imaging techniques
Processing

Keywords

  • flat space
  • inhomogeneity correction
  • OCT
  • retina

ASJC Scopus subject areas

  • Biomedical Engineering
  • Radiology Nuclear Medicine and imaging

Cite this

Lang, A., Carass, A., Jedynak, B. M., Solomon, S., Calabresi, P., & Prince, J. L. (2016). Intensity inhomogeneity correction of macular OCT using N3 and retinal flatspace. In 2016 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016 - Proceedings (Vol. 2016-June, pp. 197-200). [7493243] IEEE Computer Society. https://doi.org/10.1109/ISBI.2016.7493243

Intensity inhomogeneity correction of macular OCT using N3 and retinal flatspace. / Lang, Andrew; Carass, Aaron; Jedynak, Bruno M.; Solomon, Sharon; Calabresi, Peter; Prince, Jerry Ladd.

2016 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016 - Proceedings. Vol. 2016-June IEEE Computer Society, 2016. p. 197-200 7493243.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Lang, A, Carass, A, Jedynak, BM, Solomon, S, Calabresi, P & Prince, JL 2016, Intensity inhomogeneity correction of macular OCT using N3 and retinal flatspace. in 2016 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016 - Proceedings. vol. 2016-June, 7493243, IEEE Computer Society, pp. 197-200, 2016 IEEE 13th International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016, Prague, Czech Republic, 4/13/16. https://doi.org/10.1109/ISBI.2016.7493243
Lang A, Carass A, Jedynak BM, Solomon S, Calabresi P, Prince JL. Intensity inhomogeneity correction of macular OCT using N3 and retinal flatspace. In 2016 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016 - Proceedings. Vol. 2016-June. IEEE Computer Society. 2016. p. 197-200. 7493243 https://doi.org/10.1109/ISBI.2016.7493243
Lang, Andrew ; Carass, Aaron ; Jedynak, Bruno M. ; Solomon, Sharon ; Calabresi, Peter ; Prince, Jerry Ladd. / Intensity inhomogeneity correction of macular OCT using N3 and retinal flatspace. 2016 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016 - Proceedings. Vol. 2016-June IEEE Computer Society, 2016. pp. 197-200
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