Incorporating machine learning approaches to assess putative environmental risk factors for multiple sclerosis

Ellen Mahar Mowry, Anna K. Hedström, Milena A. Gianfrancesco, Xiaorong Shao, Catherine A. Schaefer, Ling Shen, Kalliope H. Bellesis, Farren B.S. Briggs, Tomas Olsson, Lars Alfredsson, Lisa F. Barcellos

Research output: Contribution to journalArticle

Abstract

Background: Multiple sclerosis (MS) incidence has increased recently, particularly in women, suggesting a possible role of one or more environmental exposures in MS risk. The study objective was to determine if animal, dietary, recreational, or occupational exposures are associated with MS risk. Methods: Least absolute shrinkage and selection operator (LASSO) regression was used to identify a subset of exposures with potential relevance to disease in a large population-based (Kaiser Permanente Northern California [KPNC]) case-control study. Variables with non-zero coefficients were analyzed in matched conditional logistic regression analyses, adjusted for established environmental risk factors and socioeconomic status (if relevant in univariate screening),± genetic risk factors, in the KPNC cohort and, for purposes of replication, separately in the Swedish Epidemiological Investigation of MS cohort. These variables were also assessed in models stratified by HLA-DRB1*15:01 status since interactions between risk factors and that haplotype have been described. Results: There was a suggestive association of pesticide exposure with having MS among men, but only in those who were positive for HLA-DRB1*15:01 (OR pooled = 3.11, 95% CI 0.87, 11.16, p = 0.08). Conclusions: While this finding requires confirmation, it is interesting given the association between pesticide exposure and other neurological diseases. The study also demonstrates the application of LASSO to identify environmental exposures with reduced multiple statistical testing penalty. Machine learning approaches may be useful for future investigations of concomitant MS risk or prognostic factors.

Original languageEnglish (US)
Pages (from-to)135-141
Number of pages7
JournalMultiple Sclerosis and Related Disorders
Volume24
DOIs
StatePublished - Aug 1 2018

Keywords

  • Environmental exposure
  • Epidemiology
  • Gene-environment interaction
  • Keywords:
  • Multiple sclerosis
  • Occupational exposure

ASJC Scopus subject areas

  • Neurology
  • Clinical Neurology

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  • Cite this

    Mowry, E. M., Hedström, A. K., Gianfrancesco, M. A., Shao, X., Schaefer, C. A., Shen, L., Bellesis, K. H., Briggs, F. B. S., Olsson, T., Alfredsson, L., & Barcellos, L. F. (2018). Incorporating machine learning approaches to assess putative environmental risk factors for multiple sclerosis. Multiple Sclerosis and Related Disorders, 24, 135-141. https://doi.org/10.1016/j.msard.2018.06.009