In-depth view of structure, activity, and evolution of rice chromosome 10

Y. Yu; T. Rambo; J. Currie; C. Saski; H. R. Kim; K. Collura; S. Thompson; J. Simmons; T. J. Yang; G. Nah; A. J. Patel; S. Thurmond; D. Henry; R. Oates; M. Palmer; G. Pries; J. Gibson; H. Anderson; M. Paradkar; L. Crane; J. Dale; M. B. Carver; T. Wood; D. Frisch; F. Engler; C. Soderlund; L. E. Palmer; L. Tetylman; L. Nascimento; M. de la Bastide; L. Spiegel; D. Ware; A. O'Shaughnessy; S. Dike; N. Dedhia; R. Preston; E. Huang; K. Ferraro; K. Kuit; B. Miller; T. Zutavern; F. Katzenberger; S. Muller; V. Balija; R. A. Martienssen; L. Stein; P. Minx; D. Johnson; H. Cordum; E. Mardis; Z. Cheng; J. Jiang; R. Wilson; W. R. McCombie; R. A. Wing; Q. Yuan; S. Ouyang; J. Liu; K. M. Jones; K. Gansberger; K. Moffat; J. Hill; T. Tsitrin; L. Overton; J. Bera; M. Kim; S. Jin; L. Tallon; A. Ciecko; G. Pai; S. van Aken; T. Utterback; S. Reidmuller; J. Bormann; T. Feldblyum; J. Hsiao; V. Zismann; S. Blunt; A. de Vazeilles; T. Shaffer; H. Koo; B. Suh; Q. Yang; B. Haas; J. Peterson; M. Pertea; N. Volfovsky; J. Wortman; O. White; S. L. Salzberg; C. M. Fraser; C. Robin Buell; J. Messing; R. Song; G. Fuks; V. Llaca; S. Kovchak; S. Young; J. E. Bowers; A. H. Paterson; M. A. Johns; L. Mao; H. Pan; R. A. Dean

doi:10.1126/science.1083523

In-depth view of structure, activity, and evolution of rice chromosome 10

Y. Yu, T. Rambo, J. Currie, C. Saski, H. R. Kim, K. Collura, S. Thompson, J. Simmons, T. J. Yang, G. Nah, A. J. Patel, S. Thurmond, D. Henry, R. Oates, M. Palmer, G. Pries, J. Gibson, H. Anderson, M. Paradkar, L. CraneJ. Dale, M. B. Carver, T. Wood, D. Frisch, F. Engler, C. Soderlund, L. E. Palmer, L. Tetylman, L. Nascimento, M. de la Bastide, L. Spiegel, D. Ware, A. O'Shaughnessy, S. Dike, N. Dedhia, R. Preston, E. Huang, K. Ferraro, K. Kuit, B. Miller, T. Zutavern, F. Katzenberger, S. Muller, V. Balija, R. A. Martienssen, L. Stein, P. Minx, D. Johnson, H. Cordum, E. Mardis, Z. Cheng, J. Jiang, R. Wilson, W. R. McCombie, R. A. Wing, Q. Yuan, S. Ouyang, J. Liu, K. M. Jones, K. Gansberger, K. Moffat, J. Hill, T. Tsitrin, L. Overton, J. Bera, M. Kim, S. Jin, L. Tallon, A. Ciecko, G. Pai, S. van Aken, T. Utterback, S. Reidmuller, J. Bormann, T. Feldblyum, J. Hsiao, V. Zismann, S. Blunt, A. de Vazeilles, T. Shaffer, H. Koo, B. Suh, Q. Yang, B. Haas, J. Peterson, M. Pertea, N. Volfovsky, J. Wortman, O. White, S. L. Salzberg, C. M. Fraser, C. Robin Buell, J. Messing, R. Song, G. Fuks, V. Llaca, S. Kovchak, S. Young, J. E. Bowers, A. H. Paterson, M. A. Johns, L. Mao, H. Pan, R. A. Dean

School of Medicine

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Abstract

Rice is the world's most important food crop and a model for cereal research. At 430 megabases in size, its genome is the most compact of the cereals. We report the sequence of chromosome 10, the smallest of the 12 rice chromosomes (22.4 megabases), which contains 3471 genes. Chromosome 10 contains considerable heterochromatin with an enrichment of repetitive elements on 10S and an enrichment of expressed genes on 10L. Multiple insertions from organellar genomes were detected. Collinearity was apparent between rice chromosome 10 and sorghum and maize. Comparison between the draft and finished sequence demonstrates the importance of finished sequence.

Original language	English (US)
Pages (from-to)	1566-1569
Number of pages	4
Journal	Science
Volume	300
Issue number	5625
DOIs	https://doi.org/10.1126/science.1083523
State	Published - Jun 6 2003

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10.1126/science.1083523

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Yu, Y., Rambo, T., Currie, J., Saski, C., Kim, H. R., Collura, K., Thompson, S., Simmons, J., Yang, T. J., Nah, G., Patel, A. J., Thurmond, S., Henry, D., Oates, R., Palmer, M., Pries, G., Gibson, J., Anderson, H., Paradkar, M., ... Dean, R. A. (2003). In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 300(5625), 1566-1569. https://doi.org/10.1126/science.1083523

Yu, Y, Rambo, T, Currie, J, Saski, C, Kim, HR, Collura, K, Thompson, S, Simmons, J, Yang, TJ, Nah, G, Patel, AJ, Thurmond, S, Henry, D, Oates, R, Palmer, M, Pries, G, Gibson, J, Anderson, H, Paradkar, M, Crane, L, Dale, J, Carver, MB, Wood, T, Frisch, D, Engler, F, Soderlund, C, Palmer, LE, Tetylman, L, Nascimento, L, de la Bastide, M, Spiegel, L, Ware, D, O'Shaughnessy, A, Dike, S, Dedhia, N, Preston, R, Huang, E, Ferraro, K, Kuit, K, Miller, B, Zutavern, T, Katzenberger, F, Muller, S, Balija, V, Martienssen, RA, Stein, L, Minx, P, Johnson, D, Cordum, H, Mardis, E, Cheng, Z, Jiang, J, Wilson, R, McCombie, WR, Wing, RA, Yuan, Q, Ouyang, S, Liu, J, Jones, KM, Gansberger, K, Moffat, K, Hill, J, Tsitrin, T, Overton, L, Bera, J, Kim, M, Jin, S, Tallon, L, Ciecko, A, Pai, G, van Aken, S, Utterback, T, Reidmuller, S, Bormann, J, Feldblyum, T, Hsiao, J, Zismann, V, Blunt, S, de Vazeilles, A, Shaffer, T, Koo, H, Suh, B, Yang, Q, Haas, B, Peterson, J, Pertea, M, Volfovsky, N, Wortman, J, White, O, Salzberg, SL, Fraser, CM, Robin Buell, C, Messing, J, Song, R, Fuks, G, Llaca, V, Kovchak, S, Young, S, Bowers, JE, Paterson, AH, Johns, MA, Mao, L, Pan, H & Dean, RA 2003, 'In-depth view of structure, activity, and evolution of rice chromosome 10', Science, vol. 300, no. 5625, pp. 1566-1569. https://doi.org/10.1126/science.1083523

@article{8f40f3a6268945d383f7f93614f4d29b,

title = "In-depth view of structure, activity, and evolution of rice chromosome 10",

abstract = "Rice is the world's most important food crop and a model for cereal research. At 430 megabases in size, its genome is the most compact of the cereals. We report the sequence of chromosome 10, the smallest of the 12 rice chromosomes (22.4 megabases), which contains 3471 genes. Chromosome 10 contains considerable heterochromatin with an enrichment of repetitive elements on 10S and an enrichment of expressed genes on 10L. Multiple insertions from organellar genomes were detected. Collinearity was apparent between rice chromosome 10 and sorghum and maize. Comparison between the draft and finished sequence demonstrates the importance of finished sequence.",

author = "Y. Yu and T. Rambo and J. Currie and C. Saski and Kim, {H. R.} and K. Collura and S. Thompson and J. Simmons and Yang, {T. J.} and G. Nah and Patel, {A. J.} and S. Thurmond and D. Henry and R. Oates and M. Palmer and G. Pries and J. Gibson and H. Anderson and M. Paradkar and L. Crane and J. Dale and Carver, {M. B.} and T. Wood and D. Frisch and F. Engler and C. Soderlund and Palmer, {L. E.} and L. Tetylman and L. Nascimento and {de la Bastide}, M. and L. Spiegel and D. Ware and A. O'Shaughnessy and S. Dike and N. Dedhia and R. Preston and E. Huang and K. Ferraro and K. Kuit and B. Miller and T. Zutavern and F. Katzenberger and S. Muller and V. Balija and Martienssen, {R. A.} and L. Stein and P. Minx and D. Johnson and H. Cordum and E. Mardis and Z. Cheng and J. Jiang and R. Wilson and McCombie, {W. R.} and Wing, {R. A.} and Q. Yuan and S. Ouyang and J. Liu and Jones, {K. M.} and K. Gansberger and K. Moffat and J. Hill and T. Tsitrin and L. Overton and J. Bera and M. Kim and S. Jin and L. Tallon and A. Ciecko and G. Pai and {van Aken}, S. and T. Utterback and S. Reidmuller and J. Bormann and T. Feldblyum and J. Hsiao and V. Zismann and S. Blunt and {de Vazeilles}, A. and T. Shaffer and H. Koo and B. Suh and Q. Yang and B. Haas and J. Peterson and M. Pertea and N. Volfovsky and J. Wortman and O. White and Salzberg, {S. L.} and Fraser, {C. M.} and {Robin Buell}, C. and J. Messing and R. Song and G. Fuks and V. Llaca and S. Kovchak and S. Young and Bowers, {J. E.} and Paterson, {A. H.} and Johns, {M. A.} and L. Mao and H. Pan and Dean, {R. A.}",

year = "2003",

month = jun,

day = "6",

doi = "10.1126/science.1083523",

language = "English (US)",

volume = "300",

pages = "1566--1569",

journal = "Science",

issn = "0036-8075",

publisher = "American Association for the Advancement of Science",

number = "5625",

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TY - JOUR

T1 - In-depth view of structure, activity, and evolution of rice chromosome 10

AU - Yu, Y.

AU - Rambo, T.

AU - Currie, J.

AU - Saski, C.

AU - Kim, H. R.

AU - Collura, K.

AU - Thompson, S.

AU - Simmons, J.

AU - Yang, T. J.

AU - Nah, G.

AU - Patel, A. J.

AU - Thurmond, S.

AU - Henry, D.

AU - Oates, R.

AU - Palmer, M.

AU - Pries, G.

AU - Gibson, J.

AU - Anderson, H.

AU - Paradkar, M.

AU - Crane, L.

AU - Dale, J.

AU - Carver, M. B.

AU - Wood, T.

AU - Frisch, D.

AU - Engler, F.

AU - Soderlund, C.

AU - Palmer, L. E.

AU - Tetylman, L.

AU - Nascimento, L.

AU - de la Bastide, M.

AU - Spiegel, L.

AU - Ware, D.

AU - O'Shaughnessy, A.

AU - Dike, S.

AU - Dedhia, N.

AU - Preston, R.

AU - Huang, E.

AU - Ferraro, K.

AU - Kuit, K.

AU - Miller, B.

AU - Zutavern, T.

AU - Katzenberger, F.

AU - Muller, S.

AU - Balija, V.

AU - Martienssen, R. A.

AU - Stein, L.

AU - Minx, P.

AU - Johnson, D.

AU - Cordum, H.

AU - Mardis, E.

AU - Cheng, Z.

AU - Jiang, J.

AU - Wilson, R.

AU - McCombie, W. R.

AU - Wing, R. A.

AU - Yuan, Q.

AU - Ouyang, S.

AU - Liu, J.

AU - Jones, K. M.

AU - Gansberger, K.

AU - Moffat, K.

AU - Hill, J.

AU - Tsitrin, T.

AU - Overton, L.

AU - Bera, J.

AU - Kim, M.

AU - Jin, S.

AU - Tallon, L.

AU - Ciecko, A.

AU - Pai, G.

AU - van Aken, S.

AU - Utterback, T.

AU - Reidmuller, S.

AU - Bormann, J.

AU - Feldblyum, T.

AU - Hsiao, J.

AU - Zismann, V.

AU - Blunt, S.

AU - de Vazeilles, A.

AU - Shaffer, T.

AU - Koo, H.

AU - Suh, B.

AU - Yang, Q.

AU - Haas, B.

AU - Peterson, J.

AU - Pertea, M.

AU - Volfovsky, N.

AU - Wortman, J.

AU - White, O.

AU - Salzberg, S. L.

AU - Fraser, C. M.

AU - Robin Buell, C.

AU - Messing, J.

AU - Song, R.

AU - Fuks, G.

AU - Llaca, V.

AU - Kovchak, S.

AU - Young, S.

AU - Bowers, J. E.

AU - Paterson, A. H.

AU - Johns, M. A.

AU - Mao, L.

AU - Pan, H.

AU - Dean, R. A.

PY - 2003/6/6

Y1 - 2003/6/6

N2 - Rice is the world's most important food crop and a model for cereal research. At 430 megabases in size, its genome is the most compact of the cereals. We report the sequence of chromosome 10, the smallest of the 12 rice chromosomes (22.4 megabases), which contains 3471 genes. Chromosome 10 contains considerable heterochromatin with an enrichment of repetitive elements on 10S and an enrichment of expressed genes on 10L. Multiple insertions from organellar genomes were detected. Collinearity was apparent between rice chromosome 10 and sorghum and maize. Comparison between the draft and finished sequence demonstrates the importance of finished sequence.

AB - Rice is the world's most important food crop and a model for cereal research. At 430 megabases in size, its genome is the most compact of the cereals. We report the sequence of chromosome 10, the smallest of the 12 rice chromosomes (22.4 megabases), which contains 3471 genes. Chromosome 10 contains considerable heterochromatin with an enrichment of repetitive elements on 10S and an enrichment of expressed genes on 10L. Multiple insertions from organellar genomes were detected. Collinearity was apparent between rice chromosome 10 and sorghum and maize. Comparison between the draft and finished sequence demonstrates the importance of finished sequence.

UR - http://www.scopus.com/inward/record.url?scp=0038581538&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=0038581538&partnerID=8YFLogxK

U2 - 10.1126/science.1083523

DO - 10.1126/science.1083523

M3 - Article

C2 - 12791992

AN - SCOPUS:0038581538

SN - 0036-8075

VL - 300

SP - 1566

EP - 1569

JO - Science

JF - Science

IS - 5625

ER -

In-depth view of structure, activity, and evolution of rice chromosome 10

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