Identification and characterization of a spliced C-type lectin-like gene encoded by rat cytomegalovirus

S. Voigt, G. R. Sandford, L. Ding, W. H. Burns

Research output: Contribution to journalArticle

Abstract

The English isolate of rat cytomegalovirus (RCMV) encodes a 20-kDa protein with a C-type lectin-like domain that is expressed in the delayed-early and late phases of the viral replication cycle. Genomic sequence analysis of the restriction fragment KpnR of RCMV revealed significant homology to several C-type lectin-containing molecules implicated in natural killer (NK) and T-cell interactions, as well as genes from four poxviruses and African swine fever virus. The gene is spliced into five exons and shows a splicing pattern with exon boundaries similar to those observed in the human differentiation antigen CD69. The cap site of the gene was mapped by RNase protection, 5′ rapid amplification of cDNA ends, and primer extension experiments. This analysis demonstrated that the core promoter of the RCMV lectin-like gene contains a GATA rather than a TATA box. Splicing patterns were confirmed with isolates from an infected-cell cDNA library. A unique aspect of the protein is that its translation is not initiated by the canonical methionine but rather by alanine. To study its role in virus replication and pathogenesis, a recombinant virus was constructed in which the gene is interrupted. Replication in tissue culture was similar to that of wild-type virus.

Original languageEnglish (US)
Pages (from-to)603-611
Number of pages9
JournalJournal of Virology
Volume75
Issue number2
DOIs
StatePublished - 2001
Externally publishedYes

Fingerprint

Murid herpesvirus 2
Muromegalovirus
C-Type Lectins
lectins
virus replication
Genes
exons
Exons
genes
African Swine Fever Virus
differentiation antigens
Poxviridae
African swine fever virus
Viruses
TATA box
viruses
TATA Box
Natural Killer T-Cells
gene interaction
rapid amplification of cDNA ends

ASJC Scopus subject areas

  • Immunology

Cite this

Identification and characterization of a spliced C-type lectin-like gene encoded by rat cytomegalovirus. / Voigt, S.; Sandford, G. R.; Ding, L.; Burns, W. H.

In: Journal of Virology, Vol. 75, No. 2, 2001, p. 603-611.

Research output: Contribution to journalArticle

Voigt, S. ; Sandford, G. R. ; Ding, L. ; Burns, W. H. / Identification and characterization of a spliced C-type lectin-like gene encoded by rat cytomegalovirus. In: Journal of Virology. 2001 ; Vol. 75, No. 2. pp. 603-611.
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