Hypoxia induces the breast cancer stem cell phenotype by HIF-dependent and ALKBH5-mediated m6A-demethylation of NANOG mRNA

Chuanzhao Zhang, Debangshu Samanta, Haiquan Lu, John W. Bullen, Huimin Zhang, Ivan Chen, Xiaoshun He, Gregg L Semenza

Research output: Contribution to journalArticle

Abstract

N6-methyladenosine (m6A) modification of mRNA plays a role in regulating embryonic stem cell pluripotency. However, the physiological signals that determine the balance between methylation and demethylation have not been described, nor have studies addressed the role of m6A in cancer stem cells. We report that exposure of breast cancer cells to hypoxia stimulated hypoxiainducible factor (HIF)-1α- and HIF-2α-dependent expression of AlkB homolog 5 (ALKBH5), an m6A demethylase, which demethylated NANOG mRNA, which encodes a pluripotency factor, at an m6A residue in the 3′-UTR. Increased NANOG mRNA and protein expression, and the breast cancer stem cell (BCSC) phenotype, were induced by hypoxia in an HIF- and ALKBH5-dependent manner. Insertion of the NANOG 3′-UTR into a luciferase reporter gene led to regulation of luciferase activity by O2, HIFs, and ALKBH5, which was lost upon mutation of the methylated residue. ALKBH5 overexpression decreased NANOG mRNA methylation, increased NANOG levels, and increased the percentage of BCSCs, phenocopying the effect of hypoxia. Knockdown of ALKBH5 expression in MDAMB- 231 human breast cancer cells significantly reduced their capacity for tumor initiation as a result of reduced numbers of BCSCs. Thus, HIF-dependent ALKBH5 expression mediates enrichment of BCSCs in the hypoxic tumor microenvironment.

Original languageEnglish (US)
Pages (from-to)E2047-E2056
JournalProceedings of the National Academy of Sciences of the United States of America
Volume113
Issue number14
DOIs
StatePublished - Apr 5 2016

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Neoplastic Stem Cells
Breast Neoplasms
Phenotype
Messenger RNA
3' Untranslated Regions
Luciferases
Methylation
Cell Hypoxia
Tumor Microenvironment
Embryonic Stem Cells
Reporter Genes
Hypoxia
AlkB Enzymes
Mutation
Neoplasms
Proteins

Keywords

  • Hypoxia-inducible factors
  • Metastasis
  • Pluripotency factors
  • Self-renewal
  • Tumorigenesis

ASJC Scopus subject areas

  • General

Cite this

Hypoxia induces the breast cancer stem cell phenotype by HIF-dependent and ALKBH5-mediated m6A-demethylation of NANOG mRNA. / Zhang, Chuanzhao; Samanta, Debangshu; Lu, Haiquan; Bullen, John W.; Zhang, Huimin; Chen, Ivan; He, Xiaoshun; Semenza, Gregg L.

In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 113, No. 14, 05.04.2016, p. E2047-E2056.

Research output: Contribution to journalArticle

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AU - Zhang, Huimin

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AU - He, Xiaoshun

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