Human protein reference database as a discovery resource for proteomics

Suraj Peri; J. Daniel Navarro; Troels Z. Kristiansen; Ramars Amanchy; Vineeth Surendranath; Babylakshmi Muthusamy; T. K B Gandhi; K. N. Chandrika; Nandan Deshpande; Shubha Suresh; B. P. Rashmi; K. Shanker; N. Padma; Vidya Niranjan; H. C. Harsha; Naveen Talreja; B. M. Vrushabendra; M. A. Ramya; A. J. Yatish; Mary Joy; H. N. Shivashankar; M. P. Kavitha; Minal Menezes; Dipanwita Roy Choudhury; Neelanjana Ghosh; R. Saravana; Sreenath Chandran; Sujatha Mohan; Chandra Kiran Jonnalagadda; C. K. Prasad; Chandan Kumar-Sinha; Krishna S. Deshpande; Akhilesh Pandey

Human protein reference database as a discovery resource for proteomics

Suraj Peri, J. Daniel Navarro, Troels Z. Kristiansen, Ramars Amanchy, Vineeth Surendranath, Babylakshmi Muthusamy, T. K B Gandhi, K. N. Chandrika, Nandan Deshpande, Shubha Suresh, B. P. Rashmi, K. Shanker, N. Padma, Vidya Niranjan, H. C. Harsha, Naveen Talreja, B. M. Vrushabendra, M. A. Ramya, A. J. Yatish, Mary JoyH. N. Shivashankar, M. P. Kavitha, Minal Menezes, Dipanwita Roy Choudhury, Neelanjana Ghosh, R. Saravana, Sreenath Chandran, Sujatha Mohan, Chandra Kiran Jonnalagadda, C. K. Prasad, Chandan Kumar-Sinha, Krishna S. Deshpande, Akhilesh Pandey

School of Medicine

Research output: Contribution to journal › Article › peer-review

433 Scopus citations

Abstract

The rapid pace at which genomic and proteomic data is being generated necessitates the development of tools and resources for managing data that allow integration of information from disparate sources. The Human Protein Reference Database (http://www.hprd.org) is a web-based resource based on open source technologies for protein information about several aspects of human proteins including protein-protein interactions, post-translational modifications, enzyme-substrate relationships and disease associations. This information was derived manually by a critical reading of the published literature by expert biologists and through bioinformatics analyses of the protein sequence. This database will assist in biomedical discoveries by serving as a resource of genomic and proteomic information and providing an integrated view of sequence, structure, function and protein networks in health and disease.

Original language	English (US)
Journal	Nucleic Acids Research
Volume	32
Issue number	DATABASE ISS.
State	Published - Jan 1 2004

ASJC Scopus subject areas

Genetics

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Peri, S., Navarro, J. D., Kristiansen, T. Z., Amanchy, R., Surendranath, V., Muthusamy, B., Gandhi, T. K. B., Chandrika, K. N., Deshpande, N., Suresh, S., Rashmi, B. P., Shanker, K., Padma, N., Niranjan, V., Harsha, H. C., Talreja, N., Vrushabendra, B. M., Ramya, M. A., Yatish, A. J., ... Pandey, A. (2004). Human protein reference database as a discovery resource for proteomics. Nucleic Acids Research, 32(DATABASE ISS.).

Peri, S, Navarro, JD, Kristiansen, TZ, Amanchy, R, Surendranath, V, Muthusamy, B, Gandhi, TKB, Chandrika, KN, Deshpande, N, Suresh, S, Rashmi, BP, Shanker, K, Padma, N, Niranjan, V, Harsha, HC, Talreja, N, Vrushabendra, BM, Ramya, MA, Yatish, AJ, Joy, M, Shivashankar, HN, Kavitha, MP, Menezes, M, Choudhury, DR, Ghosh, N, Saravana, R, Chandran, S, Mohan, S, Jonnalagadda, CK, Prasad, CK, Kumar-Sinha, C, Deshpande, KS & Pandey, A 2004, 'Human protein reference database as a discovery resource for proteomics', Nucleic Acids Research, vol. 32, no. DATABASE ISS.

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AU - Muthusamy, Babylakshmi

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AU - Talreja, Naveen

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AU - Ramya, M. A.

AU - Yatish, A. J.

AU - Joy, Mary

AU - Shivashankar, H. N.

AU - Kavitha, M. P.

AU - Menezes, Minal

AU - Choudhury, Dipanwita Roy

AU - Ghosh, Neelanjana

AU - Saravana, R.

AU - Chandran, Sreenath

AU - Mohan, Sujatha

AU - Jonnalagadda, Chandra Kiran

AU - Prasad, C. K.

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Human protein reference database as a discovery resource for proteomics

Abstract

ASJC Scopus subject areas

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