hPDI: A database of experimental human protein-DNA interactions

Zhi Xie, Shaohui Hu, Seth Blackshaw, Heng Zhu, Jiang Qian

Research output: Contribution to journalArticle

Abstract

Summary: The human protein DNA Interactome (hPDI) database holds experimental protein-DNA interaction data for humans identified by protein microarray assays. The unique characteristics of hPDI are that it contains consensus DNA-binding sequences not only for nearly 500 human transcription factors but also for >500 unconventional DNA-binding proteins, which are completely uncharacterized previously. Users can browse, search and download a subset or the entire data via a web interface. This database is freely accessible for any academic purposes.

Original languageEnglish (US)
Article numberbtp631
Pages (from-to)287-289
Number of pages3
JournalBioinformatics
Volume26
Issue number2
DOIs
StatePublished - Jan 2010

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ASJC Scopus subject areas

  • Statistics and Probability
  • Biochemistry
  • Molecular Biology
  • Computer Science Applications
  • Computational Theory and Mathematics
  • Computational Mathematics

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