hPDI

A database of experimental human protein-DNA interactions

Zhi Xie, Shaohui Hu, Seth Blackshaw, Heng Zhu, Jiang Qian

Research output: Contribution to journalArticle

Abstract

Summary: The human protein DNA Interactome (hPDI) database holds experimental protein-DNA interaction data for humans identified by protein microarray assays. The unique characteristics of hPDI are that it contains consensus DNA-binding sequences not only for nearly 500 human transcription factors but also for >500 unconventional DNA-binding proteins, which are completely uncharacterized previously. Users can browse, search and download a subset or the entire data via a web interface. This database is freely accessible for any academic purposes.

Original languageEnglish (US)
Article numberbtp631
Pages (from-to)287-289
Number of pages3
JournalBioinformatics
Volume26
Issue number2
DOIs
StatePublished - 2010

Fingerprint

DNA
Databases
Proteins
Protein
Interaction
DNA-binding Protein
Protein Array Analysis
Protein Databases
Human Factors
Nucleic Acid Databases
DNA-Binding Proteins
Microarrays
Transcription Factor
Microarray
Transcription factors
Assays
Transcription Factors
Entire
Subset
Human

ASJC Scopus subject areas

  • Biochemistry
  • Molecular Biology
  • Computational Theory and Mathematics
  • Computational Mathematics
  • Statistics and Probability
  • Computer Science Applications
  • Medicine(all)

Cite this

hPDI : A database of experimental human protein-DNA interactions. / Xie, Zhi; Hu, Shaohui; Blackshaw, Seth; Zhu, Heng; Qian, Jiang.

In: Bioinformatics, Vol. 26, No. 2, btp631, 2010, p. 287-289.

Research output: Contribution to journalArticle

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