Hawkeye: An interactive visual analytics tool for genome assemblies

Michael C. Schatz, Adam M. Phillippy, Ben Shneiderman, Steven L. Salzberg

Research output: Contribution to journalArticle

Abstract

Genome sequencing remains an inexact science, and genome sequences can contain significant errors if they are not carefully examined. Hawkeye is our new visual analytics tool for genome assemblies, designed to aid in identifying and correcting assembly errors. Users can analyze all levels of an assembly along with summary statistics and assembly metrics, and are guided by a ranking component towards likely mis-assemblies. Hawkeye is freely available and released as part of the open source AMOS project http://amos.sourceforge.net/hawkeye.

Original languageEnglish (US)
Article numberR34
JournalGenome biology
Volume8
Issue number3
DOIs
StatePublished - Mar 9 2007
Externally publishedYes

ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics
  • Genetics
  • Cell Biology

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