Generation of Rab-based transgenic lines for in vivo studies of endosome biology in zebrafish

Brian Clark, Mark Winter, Andrew R. Cohen, Brian A. Link

Research output: Contribution to journalArticle

Abstract

The Rab family of small GTPases function as molecular switches regulating membrane and protein trafficking. Individual Rab isoforms define and are required for specific endosomal compartments. To facilitate in vivo investigation of specific Rab proteins, and endosome biology in general, we have generated transgenic zebrafish lines to mark and manipulate Rab proteins. We also developed software to track and quantify endosome dynamics within time-lapse movies. The established transgenic lines ubiquitously express EGFP fusions of Rab5c (early endosomes), Rab11a (recycling endosomes), and Rab7 (late endosomes) to study localization and dynamics during development. Additionally, we generated UAS-based transgenic lines expressing constitutive active (CA) and dominant-negative (DN) versions for each of these Rab proteins. Predicted localization and functional consequences for each line were verified through a variety of assays, including lipophilic dye uptake and Crumbs2a localization. In summary, we have established a toolset for in vivo analyses of endosome dynamics and functions.

Original languageEnglish (US)
Pages (from-to)2452-2465
Number of pages14
JournalDevelopmental Dynamics
Volume240
Issue number11
DOIs
StatePublished - Nov 1 2011
Externally publishedYes

Fingerprint

Endosomes
Zebrafish
Proteins
Monomeric GTP-Binding Proteins
Protein Transport
Motion Pictures
Protein Isoforms
Membrane Proteins
Coloring Agents
Software

Keywords

  • Endosome dynamics
  • Neuroepithelia
  • Organelle polarization
  • Zebrafish transgenic lines

ASJC Scopus subject areas

  • Developmental Biology

Cite this

Generation of Rab-based transgenic lines for in vivo studies of endosome biology in zebrafish. / Clark, Brian; Winter, Mark; Cohen, Andrew R.; Link, Brian A.

In: Developmental Dynamics, Vol. 240, No. 11, 01.11.2011, p. 2452-2465.

Research output: Contribution to journalArticle

Clark, Brian ; Winter, Mark ; Cohen, Andrew R. ; Link, Brian A. / Generation of Rab-based transgenic lines for in vivo studies of endosome biology in zebrafish. In: Developmental Dynamics. 2011 ; Vol. 240, No. 11. pp. 2452-2465.
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