TY - JOUR
T1 - Fused Estimation of Sparse Connectivity Patterns From Rest fMRI - Application to Comparison of Children and Adult Brains
AU - Zille, Pascal
AU - Calhoun, Vince D.
AU - Stephen, Julia M.
AU - Wilson, Tony W.
AU - Wang, Yu Ping
N1 - Funding Information:
This work was supported in part by NIH under Grant R01 GM109068, Grant R01 MH104680, Grant R01 MH107354, Grant P20 GM103472, Grant R01 REB020407, and Grant 1R01 EB006841, and in part by NSF under Grant 1539067.
Funding Information:
3 10.1109/TMI.2017.2721640 28682248 0b00006485dcd4f6 Active orig-research F T F F F F F Publish 10 IEEE 0278-0062 © 2017 IEEE. Personal use is permitted, but republication/redistribution requires IEEE permission. See http://www.ieee.org/publications_standards/publications/rights/index.html for more information. In this paper, we consider the problem of estimating multiple sparse, co-activated brain regions from functional magnetic resonance imaging (fMRI) observations belonging to different classes. More precisely, we propose a method to analyze similarities and differences in functional connectivity between children and young adults. Often, analysis is conducted on each class separately, and differences across classes are identified with an additional postprocessing step using adequate statistical tools. Here, we propose to rely on a generalized fused Lasso penalty, which allows us to make use of the entire data set in order to estimate connectivity patterns that are either shared across classes, or specific to a given group. By using the entire population during the estimation, we hope to increase the power of our analysis. The proposed model falls in the category of population-wise matrix decomposition, and a simple and efficient alternating direction method of multipliers algorithm is introduced to solve the associated optimization problem. After validating our approach on simulated data, experiments are performed on resting-state fMRI imaging from the Philadelphia neurodevelopmental cohort data set, comprised of normally developing children from ages 8 to 21. Developmental differences were observed in various brain regions, as a total of three class-specific resting-state components were identified. Statistical analysis of the estimated subject-specific features, as well as classification results (based on age groups, up to 81% accuracy, $n = 583$ samples) related to these components demonstrate that the proposed method is able to properly extract meaningful shared and class-specific sub-networks. 0 0000-0002-8802-1230 Zille, P. Pascal Zille Pascal Pascal Zille Zille Tulane University, New Orleans, LA, USA Author pzille@tulane.edu 0 0000-0001-9058-0747 Calhoun, V.D. Vince D. Calhoun Vince D. Vince D. Calhoun Calhoun The Mind Research Network, Albuquerque, Albuquerque, NM, USA Author 0 0000-0003-2486-747X Stephen, J.M. Julia M. Stephen Julia M. Julia M. Stephen Stephen The Mind Research Network, Albuquerque, Albuquerque, NM, USA Author 0 0000-0002-5053-8306 Wilson, T.W. Tony W. Wilson Tony W. Tony W. Wilson Wilson Department of Neurological Sciences, University of Nebraska Medical Center, Omaha, NE, USA Author 0 0000-0001-9340-5864 Wang, Y. Yu-Ping Wang Yu-Ping Yu-Ping Wang Wang Tulane University, New Orleans, LA, USA Author 2018 Oct. 2017 6 29 2018 9 28 1912402 07962262.pdf 1-1 7962262 Supplementary files. tmi-zille-2721640-mm.zip 10851612 Zip Windows, Mac README Correlation Sparse matrices Estimation Matrix decomposition Brain Data mining Time series analysis Sparse models joint lasso penalty functional connectivity brain development NIH R01 GM109068 R01 MH104680 R01 MH107354 P20 GM103472 R01 REB020407 1R01 EB006841 National Science Foundation 10.13039/100000001 1539067
Publisher Copyright:
© 2017 IEEE.
PY - 2018/10
Y1 - 2018/10
N2 - In this paper, we consider the problem of estimating multiple sparse, co-activated brain regions from functional magnetic resonance imaging (fMRI) observations belonging to different classes. More precisely, we propose a method to analyze similarities and differences in functional connectivity between children and young adults. Often, analysis is conducted on each class separately, and differences across classes are identified with an additional postprocessing step using adequate statistical tools. Here, we propose to rely on a generalized fused Lasso penalty, which allows us to make use of the entire data set in order to estimate connectivity patterns that are either shared across classes, or specific to a given group. By using the entire population during the estimation, we hope to increase the power of our analysis. The proposed model falls in the category of population-wise matrix decomposition, and a simple and efficient alternating direction method of multipliers algorithm is introduced to solve the associated optimization problem. After validating our approach on simulated data, experiments are performed on resting-state fMRI imaging from the Philadelphia neurodevelopmental cohort data set, comprised of normally developing children from ages 8 to 21. Developmental differences were observed in various brain regions, as a total of three class-specific resting-state components were identified. Statistical analysis of the estimated subject-specific features, as well as classification results (based on age groups, up to 81% accuracy, n = 583 samples) related to these components demonstrate that the proposed method is able to properly extract meaningful shared and class-specific sub-networks.
AB - In this paper, we consider the problem of estimating multiple sparse, co-activated brain regions from functional magnetic resonance imaging (fMRI) observations belonging to different classes. More precisely, we propose a method to analyze similarities and differences in functional connectivity between children and young adults. Often, analysis is conducted on each class separately, and differences across classes are identified with an additional postprocessing step using adequate statistical tools. Here, we propose to rely on a generalized fused Lasso penalty, which allows us to make use of the entire data set in order to estimate connectivity patterns that are either shared across classes, or specific to a given group. By using the entire population during the estimation, we hope to increase the power of our analysis. The proposed model falls in the category of population-wise matrix decomposition, and a simple and efficient alternating direction method of multipliers algorithm is introduced to solve the associated optimization problem. After validating our approach on simulated data, experiments are performed on resting-state fMRI imaging from the Philadelphia neurodevelopmental cohort data set, comprised of normally developing children from ages 8 to 21. Developmental differences were observed in various brain regions, as a total of three class-specific resting-state components were identified. Statistical analysis of the estimated subject-specific features, as well as classification results (based on age groups, up to 81% accuracy, n = 583 samples) related to these components demonstrate that the proposed method is able to properly extract meaningful shared and class-specific sub-networks.
KW - Sparse models
KW - brain development
KW - functional connectivity
KW - joint lasso penalty
UR - http://www.scopus.com/inward/record.url?scp=85023746657&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85023746657&partnerID=8YFLogxK
U2 - 10.1109/TMI.2017.2721640
DO - 10.1109/TMI.2017.2721640
M3 - Article
C2 - 28682248
AN - SCOPUS:85023746657
SN - 0278-0062
VL - 37
SP - 2165
EP - 2175
JO - IEEE Transactions on Medical Imaging
JF - IEEE Transactions on Medical Imaging
IS - 10
M1 - 7962262
ER -