Frequent human genomic DNA transduction driven by line-1 retrotransposition

Oxana K. Pickeral, Wojciech Makałowski, Mark S. Boguski, Jef D. Boeke

Research output: Contribution to journalArticle

Abstract

Human L1 retrotransposons can produce DNA transduction events in which unique DNA segments downstream of L1 elements are mobilized as part of aberrant retrotransposition events. That L1s are capable of carrying out such a reaction in tissue culture cells was elegantly demonstrated. Using bioinformatic approaches to analyze the structures of L1 element target site duplications and flanking sequence features, we provide evidence suggesting that ~15% of full-length L1 elements bear evidence of flanking DNA segment transduction. Extrapolating these findings to the 600,000 copies of L1 in the genome, we predict that the amount of DNA transduced by L1 represents ~1% of the genome, a fraction comparable with that occupied by exons.

Original languageEnglish (US)
Pages (from-to)411-415
Number of pages5
JournalGenome Research
Volume10
Issue number4
DOIs
StatePublished - Apr 2000

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Long Interspersed Nucleotide Elements
DNA
Genome
Retroelements
Computational Biology
Exons
Cell Culture Techniques

ASJC Scopus subject areas

  • Genetics

Cite this

Pickeral, O. K., Makałowski, W., Boguski, M. S., & Boeke, J. D. (2000). Frequent human genomic DNA transduction driven by line-1 retrotransposition. Genome Research, 10(4), 411-415. https://doi.org/10.1101/gr.10.4.411

Frequent human genomic DNA transduction driven by line-1 retrotransposition. / Pickeral, Oxana K.; Makałowski, Wojciech; Boguski, Mark S.; Boeke, Jef D.

In: Genome Research, Vol. 10, No. 4, 04.2000, p. 411-415.

Research output: Contribution to journalArticle

Pickeral, OK, Makałowski, W, Boguski, MS & Boeke, JD 2000, 'Frequent human genomic DNA transduction driven by line-1 retrotransposition', Genome Research, vol. 10, no. 4, pp. 411-415. https://doi.org/10.1101/gr.10.4.411
Pickeral, Oxana K. ; Makałowski, Wojciech ; Boguski, Mark S. ; Boeke, Jef D. / Frequent human genomic DNA transduction driven by line-1 retrotransposition. In: Genome Research. 2000 ; Vol. 10, No. 4. pp. 411-415.
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