ESTWeb: Bioinformatics services for EST sequencing projects

Apua Paquola, Milton Y. Nishyiama, Eduardo M. Reis, Aline M. da Silva, Sergio Verjovski-Almeida

Research output: Contribution to journalArticle

Abstract

Summary: ESTWeb is an internet based software package designed for uniform data processing and storage for large-scale EST sequencing projects. The package provides for: (a) reception of sequencing chromatograms; (b) sequence processing such as base-calling, vector screening, comparison with public databases; (c) storage of data and analysis in a relational database, (d) generation of a graphical report of individual sequence quality; and (e) issuing of reports with statistics of productivity and redundancy. The software facilitates real-time monitoring and evaluation of EST sequence acquisition progress along an EST sequencing project.

Original languageEnglish (US)
Pages (from-to)1587-1588
Number of pages2
JournalBioinformatics
Volume19
Issue number12
DOIs
StatePublished - Aug 12 2003
Externally publishedYes

Fingerprint

Bioinformatics
Computational Biology
Sequencing
Software
Databases
Information Storage and Retrieval
Software packages
Internet
Redundancy
Screening
Productivity
Statistics
Data Storage
Relational Database
Software Package
Monitoring
Processing
Real-time
Evaluation

ASJC Scopus subject areas

  • Clinical Biochemistry
  • Computational Theory and Mathematics
  • Computer Science Applications

Cite this

Paquola, A., Nishyiama, M. Y., Reis, E. M., da Silva, A. M., & Verjovski-Almeida, S. (2003). ESTWeb: Bioinformatics services for EST sequencing projects. Bioinformatics, 19(12), 1587-1588. https://doi.org/10.1093/bioinformatics/btg196

ESTWeb : Bioinformatics services for EST sequencing projects. / Paquola, Apua; Nishyiama, Milton Y.; Reis, Eduardo M.; da Silva, Aline M.; Verjovski-Almeida, Sergio.

In: Bioinformatics, Vol. 19, No. 12, 12.08.2003, p. 1587-1588.

Research output: Contribution to journalArticle

Paquola, A, Nishyiama, MY, Reis, EM, da Silva, AM & Verjovski-Almeida, S 2003, 'ESTWeb: Bioinformatics services for EST sequencing projects', Bioinformatics, vol. 19, no. 12, pp. 1587-1588. https://doi.org/10.1093/bioinformatics/btg196
Paquola A, Nishyiama MY, Reis EM, da Silva AM, Verjovski-Almeida S. ESTWeb: Bioinformatics services for EST sequencing projects. Bioinformatics. 2003 Aug 12;19(12):1587-1588. https://doi.org/10.1093/bioinformatics/btg196
Paquola, Apua ; Nishyiama, Milton Y. ; Reis, Eduardo M. ; da Silva, Aline M. ; Verjovski-Almeida, Sergio. / ESTWeb : Bioinformatics services for EST sequencing projects. In: Bioinformatics. 2003 ; Vol. 19, No. 12. pp. 1587-1588.
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