Estimating infectious disease transmission distances using the overall distribution of cases

Henrik Salje, Derek A.T. Cummings, Justin Lessler

Research output: Contribution to journalArticle

Abstract

The average spatial distance between transmission-linked cases is a fundamental property of infectious disease dispersal. However, the distance between a case and their infector is rarely measurable. Contact-tracing investigations are resource intensive or even impossible, particularly when only a subset of cases are detected. Here, we developed an approach that uses onset dates, the generation time distribution and location information to estimate the mean transmission distance. We tested our method using outbreak simulations. We then applied it to the 2001 foot-and-mouth outbreak in Cumbria, UK, and compared our results to contact-tracing activities. In simulations with a true mean distance of 106 m, the average mean distance estimated was 109 m when cases were fully observed (95% range of 71–142). Estimates remained consistent with the true mean distance when only five percent of cases were observed, (average estimate of 128 m, 95% range 87–165). Estimates were robust to spatial heterogeneity in the underlying population. We estimated that both the mean and the standard deviation of the transmission distance during the 2001 foot-and-mouth outbreak was 8.9 km (95% CI: 8.4 km–9.7 km). Contact-tracing activities found similar values of 6.3 km (5.2km–7.4 km) and 11.2 km (9.5 km–12.8 km), respectively. We were also able to capture the drop in mean transmission distance over the course of the outbreak. Our approach is applicable across diseases, robust to under-reporting and can inform interventions and surveillance.

Original languageEnglish (US)
Pages (from-to)10-18
Number of pages9
JournalEpidemics
Volume17
DOIs
StatePublished - Dec 1 2016

Keywords

  • Epidemiology
  • Foot-and-mouth disease
  • Infectious disease
  • Outbreaks
  • Transmission distance

ASJC Scopus subject areas

  • Parasitology
  • Epidemiology
  • Microbiology
  • Public Health, Environmental and Occupational Health
  • Virology
  • Infectious Diseases

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