Enforcing co-expression in multimodal regression framework

Pascal Zille, Vince D. Calhoun, Yu Ping Wang

Research output: Contribution to journalConference articlepeer-review

Abstract

We consider the problem of multimodal data integration for the study of complex neurological diseases (e.g. schizophrenia). Among the challenges arising in such situation, estimating the link between genetic and neurological variability within a population sample has been a promising direction. A wide variety of statistical models arose from such applications. For example, Lasso regression and its multitask extension are often used to fit a multivariate linear relationship between given pheno-type(s) and associated observations. Other approaches, such as canonical correlation analysis (CCA), are widely used to extract relationships between sets of variables from different modalities. In this paper, we propose an exploratory multivariate method combining these two methods. More Specifically, we rely on a ’CCA-type’ formulation in order to regularize the classical multimodal Lasso regression problem. The underlying motivation is to extract discriminative variables that display are also co-expressed across modalities. We first evaluate the method on a simulated dataset, and further validate it using Single Nucleotide Polymorphisms (SNP) and functional Magnetic Resonance Imaging (fMRI) data for the study of schizophrenia.

Original languageEnglish (US)
Pages (from-to)105-116
Number of pages12
JournalPacific Symposium on Biocomputing
Volume0
Issue number212679
DOIs
StatePublished - 2017
Event22nd Pacific Symposium on Biocomputing, PSB 2017 - Kohala Coast, United States
Duration: Jan 4 2017Jan 8 2017

Keywords

  • CCA
  • Collaborative regression
  • Multimodal analysis
  • Schizophrenia
  • Sparse models

ASJC Scopus subject areas

  • Biomedical Engineering
  • Computational Theory and Mathematics

Fingerprint

Dive into the research topics of 'Enforcing co-expression in multimodal regression framework'. Together they form a unique fingerprint.

Cite this