Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen

S. Chandra Nayaka, H. Shekar Shetty, C. Tara Satyavathi, Rattan S. Yadav, P. B.Kavi Kishor, M. Nagaraju, T. A. Anoop, M. Milner Kumar, Boney Kuriakose, Navajeet Chakravartty, A. V.S.K.Mohan Katta, V. B.Reddy Lachagari, Om Vir Singh, Pranav Pankaj Sahu, Swati Puranik, Pankaj Kaushal, Rakesh K. Srivastava

Research output: Contribution to journalArticle

Abstract

Sclerospora graminicola pathogen is the most important biotic production constraints of pearl millet in India, Africa and other parts of the world. We report a de novo whole genome assembly and analysis of pathotype 1, one of the most virulent pathotypes of S. graminicola from India. The draft genome assembly contained 299,901,251 bp with 65,404 genes. This study may help understand the evolutionary pattern of pathogen and aid elucidation of effector evolution for devising effective durable resistance breeding strategies in pearl millet.

Original languageEnglish (US)
Pages (from-to)18-20
Number of pages3
JournalBiotechnology Reports
Volume16
DOIs
StatePublished - Dec 1 2017
Externally publishedYes

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Pennisetum
India
Genome
Breeding
Genes

Keywords

  • Downy mildew
  • Pathotype 1
  • Pearl millet
  • Sclerospora graminicola
  • Whole genome sequence

ASJC Scopus subject areas

  • Biotechnology
  • Applied Microbiology and Biotechnology

Cite this

Nayaka, S. C., Shetty, H. S., Satyavathi, C. T., Yadav, R. S., Kishor, P. B. K., Nagaraju, M., ... Srivastava, R. K. (2017). Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen. Biotechnology Reports, 16, 18-20. https://doi.org/10.1016/j.btre.2017.07.006

Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen. / Nayaka, S. Chandra; Shetty, H. Shekar; Satyavathi, C. Tara; Yadav, Rattan S.; Kishor, P. B.Kavi; Nagaraju, M.; Anoop, T. A.; Kumar, M. Milner; Kuriakose, Boney; Chakravartty, Navajeet; Katta, A. V.S.K.Mohan; Lachagari, V. B.Reddy; Singh, Om Vir; Sahu, Pranav Pankaj; Puranik, Swati; Kaushal, Pankaj; Srivastava, Rakesh K.

In: Biotechnology Reports, Vol. 16, 01.12.2017, p. 18-20.

Research output: Contribution to journalArticle

Nayaka, SC, Shetty, HS, Satyavathi, CT, Yadav, RS, Kishor, PBK, Nagaraju, M, Anoop, TA, Kumar, MM, Kuriakose, B, Chakravartty, N, Katta, AVSKM, Lachagari, VBR, Singh, OV, Sahu, PP, Puranik, S, Kaushal, P & Srivastava, RK 2017, 'Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen', Biotechnology Reports, vol. 16, pp. 18-20. https://doi.org/10.1016/j.btre.2017.07.006
Nayaka SC, Shetty HS, Satyavathi CT, Yadav RS, Kishor PBK, Nagaraju M et al. Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen. Biotechnology Reports. 2017 Dec 1;16:18-20. https://doi.org/10.1016/j.btre.2017.07.006
Nayaka, S. Chandra ; Shetty, H. Shekar ; Satyavathi, C. Tara ; Yadav, Rattan S. ; Kishor, P. B.Kavi ; Nagaraju, M. ; Anoop, T. A. ; Kumar, M. Milner ; Kuriakose, Boney ; Chakravartty, Navajeet ; Katta, A. V.S.K.Mohan ; Lachagari, V. B.Reddy ; Singh, Om Vir ; Sahu, Pranav Pankaj ; Puranik, Swati ; Kaushal, Pankaj ; Srivastava, Rakesh K. / Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen. In: Biotechnology Reports. 2017 ; Vol. 16. pp. 18-20.
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