Double bilayers and transmembrane gradients: A molecular dynamics study of a highly charged peptide

Elizabeth J. Denning, Thomas B Woolf

Research output: Contribution to journalArticle

Abstract

The position and extent of movement of a charged peptide within a membrane bilayer provides much controversy. In our study, we have examined the nature of the highly charged helix-turn-helix motif (S3b and S4) to address how a highly charged peptide is stabilized within a bilayer in the presence of various transmembrane electrical potentials. Our double-bilayer simulation results show how the variation of the salt concentrations between the inner and outer bath establishes a transmembrane potential. Our results also show that important features of the peptide affected by changes in electrical potential are the center of mass depth, the swivel/kink degrees of conformation, and the hydrogen-bonding patterns. As the voltage gradient across the bilayer increased, the center of mass of the peptide shifted in a direction toward the outer bath. The peptide also has a higher percent helical content and the swivel/kink conformation is more rigid for nonpolarized systems where no voltage drop occurred between salt baths. Our results also provide some suggestions for how this domain may be affected by environmental changes as part of the voltage sensor in a K-channel.

Original languageEnglish (US)
Pages (from-to)3161-3173
Number of pages13
JournalBiophysical Journal
Volume95
Issue number7
DOIs
StatePublished - Oct 1 2008

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Molecular Dynamics Simulation
Peptides
Baths
Membrane Potentials
Salts
Helix-Turn-Helix Motifs
Hydrogen Bonding
Membranes

ASJC Scopus subject areas

  • Biophysics

Cite this

Double bilayers and transmembrane gradients : A molecular dynamics study of a highly charged peptide. / Denning, Elizabeth J.; Woolf, Thomas B.

In: Biophysical Journal, Vol. 95, No. 7, 01.10.2008, p. 3161-3173.

Research output: Contribution to journalArticle

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