Dictionary-based fiber orientation estimation with improved spatial consistency

Chuyang Ye, Jerry Ladd Prince

Research output: Contribution to journalArticle

Abstract

Diffusion magnetic resonance imaging (dMRI) has enabled in vivo investigation of white matter tracts. Fiber orientation (FO) estimation is a key step in tract reconstruction and has been a popular research topic in dMRI analysis. In particular, the sparsity assumption has been used in conjunction with a dictionary-based framework to achieve reliable FO estimation with a reduced number of gradient directions. Because image noise can have a deleterious effect on the accuracy of FO estimation, previous works have incorporated spatial consistency of FOs in the dictionary-based framework to improve the estimation. However, because FOs are only indirectly determined from the mixture fractions of dictionary atoms and not modeled as variables in the objective function, these methods do not incorporate FO smoothness directly, and their ability to produce smooth FOs could be limited. In this work, we propose an improvement to Fiber Orientation Reconstruction using Neighborhood Information (FORNI), which we call FORNI+; this method estimates FOs in a dictionary-based framework where FO smoothness is better enforced than in FORNI alone. We describe an objective function that explicitly models the actual FOs and the mixture fractions of dictionary atoms. Specifically, it consists of data fidelity between the observed signals and the signals represented by the dictionary, pairwise FO dissimilarity that encourages FO smoothness, and weighted ℓ1-norm terms that ensure the consistency between the actual FOs and the FO configuration suggested by the dictionary representation. The FOs and mixture fractions are then jointly estimated by minimizing the objective function using an iterative alternating optimization strategy. FORNI+ was evaluated on a simulation phantom, a physical phantom, and real brain dMRI data. In particular, in the real brain dMRI experiment, we have qualitatively and quantitatively evaluated the reproducibility of the proposed method. Results demonstrate that FORNI+ produces FOs with better quality compared with competing methods.

Original languageEnglish (US)
Pages (from-to)41-53
Number of pages13
JournalMedical Image Analysis
Volume44
DOIs
StatePublished - Feb 1 2018

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Fiber reinforced materials
Glossaries
Diffusion Magnetic Resonance Imaging
Magnetic resonance
Imaging techniques
Brain
Atoms
Research

Keywords

  • Dictionary-based FO estimation
  • Diffusion MRI
  • Pairwise FO dissimilarity
  • Spatial consistency

ASJC Scopus subject areas

  • Radiological and Ultrasound Technology
  • Radiology Nuclear Medicine and imaging
  • Computer Vision and Pattern Recognition
  • Health Informatics
  • Computer Graphics and Computer-Aided Design

Cite this

Dictionary-based fiber orientation estimation with improved spatial consistency. / Ye, Chuyang; Prince, Jerry Ladd.

In: Medical Image Analysis, Vol. 44, 01.02.2018, p. 41-53.

Research output: Contribution to journalArticle

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