CpG island in the region of an autosomal dominant polycystic kidney disease locus defines the 5′ end of a gene encoding a putative proton channel

Gerald A J Gillespie, Stefan Somlo, Gregory G. Germino, Debra Weinstat-Saslow, Stephen T. Reeders

Research output: Contribution to journalArticle

Abstract

In an attempt to isolate candidate genes for autosomal dominant polycystic kidney disease, a number of CpG-rich islands have been identified from a region defined genetically as the site of disease mutations. Genomic fragments adjacent to one of these islands were used to isolate cDNAs from both HeLa cells and cultured cystic epithelium that encode a 155-amino acid peptide having four putative transmembrane domains. The corresponding transcript was found in all tissues tested but was most abundant in brain and kidney. Potential control response elements were identified in the genomic region 5′ to the initiation codon. The deduced amino acid sequence has 93% similarity to the 16-kDa proteolipid component that is believed to be part of the proton channel of the vacuolar H+-ATPase. Possible roles for a mutated proton channel in the pathogenesis of cystic disease were considered. However, sequencing of cDNAs corresponding to both alleles of an affected individual revealed no differences in the deduced amino acid sequence. Moreover, transcript size and abundance were not altered in cystic kidney.

Original languageEnglish (US)
Pages (from-to)4289-4293
Number of pages5
JournalProceedings of the National Academy of Sciences of the United States of America
Volume88
Issue number10
StatePublished - May 15 1991
Externally publishedYes

Fingerprint

Autosomal Dominant Polycystic Kidney
CpG Islands
Protons
Amino Acid Sequence
Complementary DNA
Cystic Kidney Diseases
Vacuolar Proton-Translocating ATPases
Proteolipids
Initiator Codon
Response Elements
HeLa Cells
Islands
Genes
Epithelium
Alleles
Kidney
Amino Acids
Peptides
Mutation
Brain

Keywords

  • cDNA
  • DNA sequence homology
  • Ion channel
  • PKD1 locus
  • Positional cloning

ASJC Scopus subject areas

  • General
  • Genetics

Cite this

CpG island in the region of an autosomal dominant polycystic kidney disease locus defines the 5′ end of a gene encoding a putative proton channel. / Gillespie, Gerald A J; Somlo, Stefan; Germino, Gregory G.; Weinstat-Saslow, Debra; Reeders, Stephen T.

In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 88, No. 10, 15.05.1991, p. 4289-4293.

Research output: Contribution to journalArticle

Gillespie, Gerald A J ; Somlo, Stefan ; Germino, Gregory G. ; Weinstat-Saslow, Debra ; Reeders, Stephen T. / CpG island in the region of an autosomal dominant polycystic kidney disease locus defines the 5′ end of a gene encoding a putative proton channel. In: Proceedings of the National Academy of Sciences of the United States of America. 1991 ; Vol. 88, No. 10. pp. 4289-4293.
@article{50ddd36e7eef4f6688a821426fa9a93f,
title = "CpG island in the region of an autosomal dominant polycystic kidney disease locus defines the 5′ end of a gene encoding a putative proton channel",
abstract = "In an attempt to isolate candidate genes for autosomal dominant polycystic kidney disease, a number of CpG-rich islands have been identified from a region defined genetically as the site of disease mutations. Genomic fragments adjacent to one of these islands were used to isolate cDNAs from both HeLa cells and cultured cystic epithelium that encode a 155-amino acid peptide having four putative transmembrane domains. The corresponding transcript was found in all tissues tested but was most abundant in brain and kidney. Potential control response elements were identified in the genomic region 5′ to the initiation codon. The deduced amino acid sequence has 93{\%} similarity to the 16-kDa proteolipid component that is believed to be part of the proton channel of the vacuolar H+-ATPase. Possible roles for a mutated proton channel in the pathogenesis of cystic disease were considered. However, sequencing of cDNAs corresponding to both alleles of an affected individual revealed no differences in the deduced amino acid sequence. Moreover, transcript size and abundance were not altered in cystic kidney.",
keywords = "cDNA, DNA sequence homology, Ion channel, PKD1 locus, Positional cloning",
author = "Gillespie, {Gerald A J} and Stefan Somlo and Germino, {Gregory G.} and Debra Weinstat-Saslow and Reeders, {Stephen T.}",
year = "1991",
month = "5",
day = "15",
language = "English (US)",
volume = "88",
pages = "4289--4293",
journal = "Proceedings of the National Academy of Sciences of the United States of America",
issn = "0027-8424",
number = "10",

}

TY - JOUR

T1 - CpG island in the region of an autosomal dominant polycystic kidney disease locus defines the 5′ end of a gene encoding a putative proton channel

AU - Gillespie, Gerald A J

AU - Somlo, Stefan

AU - Germino, Gregory G.

AU - Weinstat-Saslow, Debra

AU - Reeders, Stephen T.

PY - 1991/5/15

Y1 - 1991/5/15

N2 - In an attempt to isolate candidate genes for autosomal dominant polycystic kidney disease, a number of CpG-rich islands have been identified from a region defined genetically as the site of disease mutations. Genomic fragments adjacent to one of these islands were used to isolate cDNAs from both HeLa cells and cultured cystic epithelium that encode a 155-amino acid peptide having four putative transmembrane domains. The corresponding transcript was found in all tissues tested but was most abundant in brain and kidney. Potential control response elements were identified in the genomic region 5′ to the initiation codon. The deduced amino acid sequence has 93% similarity to the 16-kDa proteolipid component that is believed to be part of the proton channel of the vacuolar H+-ATPase. Possible roles for a mutated proton channel in the pathogenesis of cystic disease were considered. However, sequencing of cDNAs corresponding to both alleles of an affected individual revealed no differences in the deduced amino acid sequence. Moreover, transcript size and abundance were not altered in cystic kidney.

AB - In an attempt to isolate candidate genes for autosomal dominant polycystic kidney disease, a number of CpG-rich islands have been identified from a region defined genetically as the site of disease mutations. Genomic fragments adjacent to one of these islands were used to isolate cDNAs from both HeLa cells and cultured cystic epithelium that encode a 155-amino acid peptide having four putative transmembrane domains. The corresponding transcript was found in all tissues tested but was most abundant in brain and kidney. Potential control response elements were identified in the genomic region 5′ to the initiation codon. The deduced amino acid sequence has 93% similarity to the 16-kDa proteolipid component that is believed to be part of the proton channel of the vacuolar H+-ATPase. Possible roles for a mutated proton channel in the pathogenesis of cystic disease were considered. However, sequencing of cDNAs corresponding to both alleles of an affected individual revealed no differences in the deduced amino acid sequence. Moreover, transcript size and abundance were not altered in cystic kidney.

KW - cDNA

KW - DNA sequence homology

KW - Ion channel

KW - PKD1 locus

KW - Positional cloning

UR - http://www.scopus.com/inward/record.url?scp=0025759904&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=0025759904&partnerID=8YFLogxK

M3 - Article

C2 - 1709739

AN - SCOPUS:0025759904

VL - 88

SP - 4289

EP - 4293

JO - Proceedings of the National Academy of Sciences of the United States of America

JF - Proceedings of the National Academy of Sciences of the United States of America

SN - 0027-8424

IS - 10

ER -