Chemical approaches to the study of protein tyrosine kinases and their implications for mechanism and inhibitor design

Philip A. Cole, Dolan Sondhi, Kyonghee Kim

Research output: Contribution to journalArticle

Abstract

Protein tyrosine kinases are critical enzymes for signal transduction. Using C-terminal Src kinase (Csk) as a model system, we discuss progress in three main areas. First, we describe our efforts to measure the transition state of the reaction using peptide substrates containing fluorotyrosine analogs. It is shown that the Bronsted nucleophile coefficient for the reaction is near zero (similar to the nonenzymatic reaction) and the required nucleophile is the neutral phenol (rather than the more chemically reactive phenoxide anion). By studying the kinase reaction in the reverse direction, a Bronsted leaving group coefficient of -0.3 was measured, indicative of protonation of the departing phenol in the transition state. Taken together, these results strongly support a dissociative transition state mechanism for the kinase. These findings set constraints on the design of transition state analog inhibitors. Second, we describe efforts toward defining the specificity of Csk for peptide and protein substrates. The main findings are that local amino acids surrounding a phosphorylated tyrosine can influence recognition, but that long-range interactions probably are more important in a physiologic protein substrate. These findings underscore the complexities in how protein kinases select protein substrates. Third, we describe a new method in protein engineering that has been applied to the study of protein kinases. The method, expressed protein ligation, allows a general approach for ligating synthetic peptides to recombinant proteins. Using expressed protein ligation, obtaining site-specifically phosphorylated proteins and proteins with the incorporation of biophysical probes becomes relatively straightforward. We have used this method to generate a tail phosphorylated, conformationally altered Csk that showed an unexpected increase in kinase activity. Copyright (C) 1999 Elsevier Science Inc.

Original languageEnglish (US)
Pages (from-to)219-229
Number of pages11
JournalPharmacology and Therapeutics
Volume82
Issue number2-3
DOIs
StatePublished - May 1999
Externally publishedYes

Fingerprint

Protein-Tyrosine Kinases
Proteins
Src peptide
Phosphotransferases
Phenol
Protein Kinases
Ligation
Protein Engineering
Peptides
Recombinant Proteins
Anions
Tyrosine
Signal Transduction
Amino Acids
Enzymes
CSK tyrosine-protein kinase

Keywords

  • Expressed protein ligation
  • Inhibition
  • Mechanism
  • Protein kinases
  • Selectivity
  • Transition state

ASJC Scopus subject areas

  • Pharmacology

Cite this

Chemical approaches to the study of protein tyrosine kinases and their implications for mechanism and inhibitor design. / Cole, Philip A.; Sondhi, Dolan; Kim, Kyonghee.

In: Pharmacology and Therapeutics, Vol. 82, No. 2-3, 05.1999, p. 219-229.

Research output: Contribution to journalArticle

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