BioPartsDB: A synthetic biology workflow web-application for education and research

Giovanni Stracquadanio, Kun Yang, Jef D. Boeke, Joel S. Bader

Research output: Contribution to journalArticle

Abstract

Synthetic biology has become a widely used technology, and expanding applications in research, education and industry require progress tracking for team-based DNA synthesis projects. Although some vendors are beginning to supply multi-kilobase sequence-verified constructs, synthesis workflows starting with short oligos remain important for cost savings and pedagogical benefit. We developed BioPartsDB as an open source, extendable workflow management system for synthetic biology projects with entry points for oligos and larger DNA constructs and ending with sequence-verified clones.

Original languageEnglish (US)
Pages (from-to)3519-3521
Number of pages3
JournalBioinformatics
Volume32
Issue number22
DOIs
StatePublished - Nov 15 2016

ASJC Scopus subject areas

  • Statistics and Probability
  • Biochemistry
  • Molecular Biology
  • Computer Science Applications
  • Computational Theory and Mathematics
  • Computational Mathematics

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